GE213157

Overview
NameGE213157
Unique NameGE213157
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7629 contig Csv1_Contig7629:90..816. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of GE213157 vs. ExPASy Swiss-Prot
Match: LAR_DESUN (Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.156e-44
Identity = 98/234 (41.88%), Postives = 141/234 (60.26%), Query Frame = 1 
Query:   25 YIGKFIVEASAKAGLPTFVLVRESTLSDPSKSQLLDHFKKLGVNIVTGDVLNHESLVKAIKQ--VDVVISTVGHTLLGDQVKIIAPIKEAGNIKRFFPSEFGNDVDRVHAVEPAKSAFATKAKIRRAVEAEGIPYTYGASNFFAAYFLPNLSQPGATAPPRDKVVILSDGNPKAVYNKEDDIGTYSIKAVDDPRPLNKILYIKPPGNIYSFNDLVSLRERKMGKTLQRVYLGRD 720
            +IG+FI +AS   G PTF+LVR   +S PSK+ ++  F+  G  ++ G + + E + K +K+  +DVVIS VG   L DQ+ ++  IK    IKRF PSEFG+DVDR   VEP  + +  K  +RRAVE  GIP+T    N  A++   +   P    PP D+  I  DGN KA +   +DIG +++K +DD R LNK ++ +P  N YS N+L SL E+K+G+TL R  +  D
Sbjct:   23 FIGQFITKASLGFGYPTFLLVRPGPVS-PSKAVIIKTFQDKGAKVIYGVINDKECMEKILKEYEIDVVISLVGGARLLDQLTLLEAIKSVKTIKRFLPSEFGHDVDRTDPVEPGLTMYKEKRLVRRAVEEYGIPFTNICCNSIASWPYYDNCHPSQVPPPMDQFQIYGDGNTKAYFIDGNDIGKFTMKTIDDIRTLNKNVHFRPSSNCYSINELASLWEKKIGRTLPRFTVTAD 255
The following BLAST results are available for this feature:
BLAST of GE213157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LAR_DESUN6.156e-4441.88Leucoanthocyanidin reductase OS=Desmodium uncinatu... [more]

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Properties
Property NameValue
Genbank descriptionC20 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213157 ID=GE213157; Name=GE213157; organism=Citrus sinensis; type=EST; length=728bp
ATTTCGAGCGGCCGCCCGGGTAGGTACATCGGCAAATTCATCGTCGAAGC
GAGCGCGAAAGCCGGCCTCCCGACGTTCGTGCTCGTGAGAGAATCCACAC
TCTCCGATCCTTCCAAATCTCAGCTCCTCGATCACTTCAAAAAACTCGGC
GTCAATATCGTCACCGGAGATGTGTTGAATCACGAGAGCTTGGTGAAGGC
GATAAAACAAGTGGACGTGGTGATATCAACGGTCGGTCACACTTTATTAG
GTGATCAGGTCAAGATTATTGCGCCCATTAAAGAAGCTGGTAACATTAAG
AGATTCTTCCCTTCAGAATTTGGGAATGATGTTGATCGAGTCCATGCCGT
TGAGCCAGCAAAATCAGCATTTGCCACAAAAGCAAAAATCCGCCGAGCCG
TTGAGGCTGAAGGGATTCCGTATACTTATGGAGCGTCGAATTTCTTTGCG
GCTTACTTCCTTCCCAATTTGTCGCAGCCCGGGGCCACTGCCCCACCGAG
GGATAAAGTTGTCATCTTAAGCGATGGAAATCCAAAAGCCGTTTATAACA
AGGAAGATGATATTGGAACCTATTCTATCAAAGCGGTTGATGATCCCAGA
CCCTTGAACAAAATCCTTTACATTAAACCCCCTGGTAATATTTACTCATT
CAATGATCTTGTGTCCTTGCGGGAGAGAAAGATGGGCAAAACCCTCCAAA
GGGTGTACCTCGGCCGCGACCACGCTAA
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