GE213155

Overview
NameGE213155
Unique NameGE213155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length236
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2799 contig Csv1_Contig2799:137..372. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLTU (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.011e-31
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = -1
Query:   21 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRT 221
            +AGTIRK+GYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRT
Sbjct:   23 QAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRT 89          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A1_ARATH (Eukaryotic translation initiation factor 5A-1 OS=Arabidopsis thaliana GN=At1g13950 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.011e-31
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = -1
Query:   21 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRT 221
            +AGTIRKNGYIVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+ KKLEDIVPSSHNCDVPHVNRT
Sbjct:   22 QAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRT 88          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLLC (Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.320e-31
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = -1
Query:   21 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRT 221
            +AGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+ KKLEDIVPSSHNCDVPHVNRT
Sbjct:   23 QAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRT 89          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.941e-31
Identity = 61/67 (91.04%), Postives = 66/67 (98.51%), Query Frame = -1
Query:   21 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRT 221
            +AGTIRK+G+IVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRT
Sbjct:   23 QAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRT 89          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.840e-31
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = -1
Query:   21 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRT 221
            +AGTIRK G+IVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRT
Sbjct:   23 QAGTIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRT 89          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A_DIACA (Eukaryotic translation initiation factor 5A OS=Dianthus caryophyllus PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.117e-30
Identity = 60/66 (90.91%), Postives = 65/66 (98.48%), Query Frame = -1
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +AGTIRK+G+IVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNR
Sbjct:   23 QAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNR 88          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A_SENVE (Eukaryotic translation initiation factor 5A OS=Senecio vernalis GN=EIFSV1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.251e-30
Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = -1
Query:   21 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRT 221
            +AGTIRK G+IVIK+R CKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRT
Sbjct:   23 QAGTIRKGGHIVIKNRACKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRT 89          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A1_MEDSA (Eukaryotic translation initiation factor 5A-1 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.459e-30
Identity = 60/68 (88.24%), Postives = 65/68 (95.59%), Query Frame = -1
Query:   21 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDI-VPSSHNCDVPHVNRT 221
            +AGTIRKNGYIVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+ KKLE++ VPSSHNCDVPHVNRT
Sbjct:   23 QAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEEVYVPSSHNCDVPHVNRT 90          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A3_ARATH (Eukaryotic translation initiation factor 5A-3 OS=Arabidopsis thaliana GN=At1g69410 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.595e-29
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = -1
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +AG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+ KKLEDIVPSSHNCDVPHVNR
Sbjct:   22 QAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNR 87          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A2_ARATH (Eukaryotic translation initiation factor 5A-2 OS=Arabidopsis thaliana GN=At1g26630 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.595e-29
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = -1
Query:   24 AGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 218
            AG IRK G+IVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+ KKLEDIVPSSHNCDVPHVNR
Sbjct:   23 AGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNR 87          
The following BLAST results are available for this feature:
BLAST of GE213155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
IF5A1_SOLTU1.011e-3192.54Eukaryotic translation initiation factor 5A-1/2 OS... [more]
IF5A1_ARATH1.011e-3192.54Eukaryotic translation initiation factor 5A-1 OS=A... [more]
IF5A4_SOLLC1.320e-3192.54Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A5_SOLTU2.941e-3191.04Eukaryotic translation initiation factor 5A-5 OS=S... [more]
IF5A1_SOLLC3.840e-3191.04Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A_DIACA1.117e-3090.91Eukaryotic translation initiation factor 5A OS=Dia... [more]
IF5A_SENVE3.251e-3089.55Eukaryotic translation initiation factor 5A OS=Sen... [more]
IF5A1_MEDSA9.459e-3088.24Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A3_ARATH3.595e-2987.88Eukaryotic translation initiation factor 5A-3 OS=A... [more]
IF5A2_ARATH3.595e-2989.23Eukaryotic translation initiation factor 5A-2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC18 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213155 ID=GE213155; Name=GE213155; organism=Citrus sinensis; type=EST; length=236bp
ATTAGCGTGGTCGCGGCCGAGGTACGGTTGACATGGGGAACATCACAGTT
ATGAGAAGAGGGGACAATATCTTCCAGCTTCTTTCCACTGAAGATATCAA
TTCCAACAAAGTGGCACTTAGCATGACCGTGCTTTCCAGTCTTGGAGGTG
GAGACTTCCACAACCTTGCAGGGACGGCTTTTGATGACGATGTAGCCGTT
CTTACGGATGGTACCTGCCCGGGCGGCCGCTCGAAA
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