GE213155

Overview
NameGE213155
Unique NameGE213155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length236
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2799 contig Csv1_Contig2799:137..372. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A_SPOFR (Eukaryotic translation initiation factor 5A OS=Spodoptera frugiperda GN=eIF-5A PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.323e-23
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = -1 
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +   +RKNG++++K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVPHV R
Sbjct:   23 QCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKR 88
[Close]
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A_SPOEX (Eukaryotic translation initiation factor 5A OS=Spodoptera exigua GN=eIF-5A PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.323e-23
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = -1 
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +   +RKNG++++K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVPHV R
Sbjct:   23 QCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKR 88
[Close]
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A2_PONAB (Eukaryotic translation initiation factor 5A-2 OS=Pongo abelii GN=EIF5A2 PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 5.027e-23
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = -1 
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R
Sbjct:   21 QCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKR 86
[Close]
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A2_MOUSE (Eukaryotic translation initiation factor 5A-2 OS=Mus musculus GN=Eif5a2 PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 5.027e-23
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = -1 
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R
Sbjct:   21 QCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKR 86
[Close]
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A2_HUMAN (Eukaryotic translation initiation factor 5A-2 OS=Homo sapiens GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 5.027e-23
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = -1 
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R
Sbjct:   21 QCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKR 86
[Close]
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A2_CHICK (Eukaryotic translation initiation factor 5A-2 OS=Gallus gallus GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 5.027e-23
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = -1 
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R
Sbjct:   21 QCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPNIKR 86
[Close]
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A1_RAT (Eukaryotic translation initiation factor 5A-1 OS=Rattus norvegicus GN=Eif5a PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 5.027e-23
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = -1 
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R
Sbjct:   21 QCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKR 86
[Close]
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A1_RABIT (Eukaryotic translation initiation factor 5A-1 OS=Oryctolagus cuniculus GN=EIF5A PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.027e-23
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = -1 
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R
Sbjct:   21 QCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKR 86
[Close]
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A1_MOUSE (Eukaryotic translation initiation factor 5A-1 OS=Mus musculus GN=Eif5a PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.027e-23
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = -1 
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R
Sbjct:   21 QCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKR 86
[Close]
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A1_HUMAN (Eukaryotic translation initiation factor 5A-1 OS=Homo sapiens GN=EIF5A PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.027e-23
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = -1 
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +   +RKNG++V+K RPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R
Sbjct:   21 QCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKR 86
The following BLAST results are available for this feature:
BLAST of GE213155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
IF5A_SPOFR1.323e-2369.70Eukaryotic translation initiation factor 5A OS=Spo... [more]
IF5A_SPOEX1.323e-2369.70Eukaryotic translation initiation factor 5A OS=Spo... [more]
IF5A2_PONAB5.027e-2368.18Eukaryotic translation initiation factor 5A-2 OS=P... [more]
IF5A2_MOUSE5.027e-2368.18Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A2_HUMAN5.027e-2368.18Eukaryotic translation initiation factor 5A-2 OS=H... [more]
IF5A2_CHICK5.027e-2368.18Eukaryotic translation initiation factor 5A-2 OS=G... [more]
IF5A1_RAT5.027e-2368.18Eukaryotic translation initiation factor 5A-1 OS=R... [more]
IF5A1_RABIT5.027e-2368.18Eukaryotic translation initiation factor 5A-1 OS=O... [more]
IF5A1_MOUSE5.027e-2368.18Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A1_HUMAN5.027e-2368.18Eukaryotic translation initiation factor 5A-1 OS=H... [more]

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Properties
Property NameValue
Genbank descriptionC18 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213155 ID=GE213155; Name=GE213155; organism=Citrus sinensis; type=EST; length=236bp
ATTAGCGTGGTCGCGGCCGAGGTACGGTTGACATGGGGAACATCACAGTT
ATGAGAAGAGGGGACAATATCTTCCAGCTTCTTTCCACTGAAGATATCAA
TTCCAACAAAGTGGCACTTAGCATGACCGTGCTTTCCAGTCTTGGAGGTG
GAGACTTCCACAACCTTGCAGGGACGGCTTTTGATGACGATGTAGCCGTT
CTTACGGATGGTACCTGCCCGGGCGGCCGCTCGAAA
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