GE213155

Overview
NameGE213155
Unique NameGE213155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length236
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2799 contig Csv1_Contig2799:137..372. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A1_SCHPO (Eukaryotic translation initiation factor 5A-1 OS=Schizosaccharomyces pombe GN=tif51a PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.048e-20
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = -1
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +   +RKNG++VIK RPCK+V++STSKTGKHGHAK H V +DIF+G+K ED+ PS+HN DVP V R
Sbjct:   23 QCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHIVALDIFNGRKYEDMSPSTHNMDVPVVKR 88          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A1_CAEEL (Eukaryotic translation initiation factor 5A-1 OS=Caenorhabditis elegans GN=iff-1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.983e-20
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = -1
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +   +RKN +++I+ RPCK+VE+STSKTGKHGHAK H V IDIF+ KKLEDI PS+HN DVP V R
Sbjct:   25 QCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTTKKLEDICPSTHNMDVPVVKR 90          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A_DICDI (Eukaryotic translation initiation factor 5A OS=Dictyostelium discoideum GN=eif5a PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.874e-20
Identity = 41/66 (62.12%), Postives = 54/66 (81.82%), Query Frame = -1
Query:   24 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 221
            +   +RKNG++VIK  PCK+V++STSKTGKHGHAK +   IDIF+GKK E+I PS+HN DVP+V+R
Sbjct:   26 QCSALRKNGFVVIKGFPCKIVDMSTSKTGKHGHAKVNITAIDIFTGKKYEEICPSTHNIDVPNVSR 91          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A_THEPD (Translation initiation factor 5A OS=Thermofilum pendens (strain Hrk 5) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.517e-11
Identity = 33/68 (48.53%), Postives = 41/68 (60.29%), Query Frame = -1
Query:   15 AGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTSA 218
            AG I+   +IVI   PCKVVEV  SKTGKHG AK   VGI  F G K   +VP+    +VP + + +A
Sbjct:    8 AGNIKVGSFIVIDGEPCKVVEVEKSKTGKHGSAKARIVGIGFFDGGKRSIVVPTDARVEVPIIKKFTA 75          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A_CALMQ (Translation initiation factor 5A OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.380e-11
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = -1
Query:   15 ARAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTSA 224
            A AG I++  YI+I + PC+VVEV  SKTGKHG AK   VGI +  G K   +VP+    +VP + + +A
Sbjct:    6 ASAGDIKEGSYIMIDNMPCRVVEVEKSKTGKHGSAKARIVGIGVIDGVKRTIVVPTDAAVEVPVIEKFTA 75          
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A_AERPE (Translation initiation factor 5A OS=Aeropyrum pernix GN=eif5a PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.765e-11
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = -1
Query:   24 ARAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNR 224
            A  G ++K  YIVI   PC++VE+S +KTGKHG AK H V I +FSG+K   + P      +P + +
Sbjct:    6 ATLGDLKKGSYIVIDGEPCRIVEMSRAKTGKHGSAKAHVVAICVFSGQKKSLVAPVDTRVQIPVIEK 72          
The following BLAST results are available for this feature:
BLAST of GE213155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
IF5A1_SCHPO1.048e-2063.64Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A1_CAEEL3.983e-2065.15Eukaryotic translation initiation factor 5A-1 OS=C... [more]
IF5A_DICDI8.874e-2062.12Eukaryotic translation initiation factor 5A OS=Dic... [more]
IF5A_THEPD1.517e-1148.53Translation initiation factor 5A OS=Thermofilum pe... [more]
IF5A_CALMQ3.380e-1145.71Translation initiation factor 5A OS=Caldivirga maq... [more]
IF5A_AERPE5.765e-1143.28Translation initiation factor 5A OS=Aeropyrum pern... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC18 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213155 ID=GE213155; Name=GE213155; organism=Citrus sinensis; type=EST; length=236bp
ATTAGCGTGGTCGCGGCCGAGGTACGGTTGACATGGGGAACATCACAGTT
ATGAGAAGAGGGGACAATATCTTCCAGCTTCTTTCCACTGAAGATATCAA
TTCCAACAAAGTGGCACTTAGCATGACCGTGCTTTCCAGTCTTGGAGGTG
GAGACTTCCACAACCTTGCAGGGACGGCTTTTGATGACGATGTAGCCGTT
CTTACGGATGGTACCTGCCCGGGCGGCCGCTCGAAA
back to top