GE213153

Overview
NameGE213153
Unique NameGE213153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS15A_PONAB (40S ribosomal protein S15a OS=Pongo abelii GN=RPS15A PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.965e-51
Identity = 97/125 (77.60%), Postives = 110/125 (88.00%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            MVR++VL DALKS+ NAEKRGKRQV+IRP SKVI++FL VM KHGYIGEFE +DDHRAGKIVV L GRLNKCGVISPRFDV +K++E W   L PSRQFG+IVLTTSAGIMDHEEARRK+ GGK+
Sbjct:    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLFPSRQFGFIVLTTSAGIMDHEEARRKHTGGKI 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS15B_DROME (40S ribosomal protein S15Ab OS=Drosophila melanogaster GN=RpS15Ab PE=2 SV=3)

HSP 1 Score: 200.675 bits (509), Expect = 2.567e-51
Identity = 97/125 (77.60%), Postives = 109/125 (87.20%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            MVR++VL DALK + NAEKRGKRQV++RP SKVIIKFL VM KHGYIGEFE V+DHRAGKIVV L GRLNKCGVISPRFD  + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+
Sbjct:    1 MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVEDHRAGKIVVNLTGRLNKCGVISPRFDAPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKI 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS15A_ICTPU (40S ribosomal protein S15a OS=Ictalurus punctatus GN=rps15a PE=2 SV=3)

HSP 1 Score: 197.208 bits (500), Expect = 2.838e-50
Identity = 96/124 (77.42%), Postives = 108/124 (87.10%), Query Frame = -3
Query:   26 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGK 397
            MVR++VL DALK + NAEKRGK QV+IRP SKVI++FL VM KHGYIGEFE +DDHRAGKIVV L GRLNKCGVISPRFDV +K++E W   LLPSRQFG+IVLTTSAGIMDHEEARRK+ GGK
Sbjct:    1 MVRMNVLADALKCINNAEKRGKAQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGK 124          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS15A_PARLI (40S ribosomal protein S15a OS=Paracentrotus lividus GN=RPS15A PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 4.841e-50
Identity = 95/125 (76.00%), Postives = 109/125 (87.20%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            MVR++VL  AL+ + NAEKR KRQV+IRP SKV IKFL+VM KHGYIGEFE VDDHR GKI+V LNGRLNKCGVISPRFDV + ++E WT+ LLPSRQFGY+VLTTS GIMDHEEARRK+VGGK+
Sbjct:    1 MVRMNVLAAALRCICNAEKRCKRQVLIRPCSKVTIKFLMVMIKHGYIGEFEVVDDHRGGKIIVNLNGRLNKCGVISPRFDVPINDMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKHVGGKI 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS22_AGABI (40S ribosomal protein S22 OS=Agaricus bisporus GN=rps22 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 3.469e-48
Identity = 92/125 (73.60%), Postives = 107/125 (85.60%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            MVR+SVLND LKS+ NA +RGKRQV++RPSSKV++KFL VMQ+HGYIGEFE +DDHR GKI+V+LNGRLNK GVISPRF+V    IE W   LLPSR  G IVLTTS+GI+DHEEARRKNVGGK+
Sbjct:    1 MVRISVLNDCLKSICNASRRGKRQVIVRPSSKVVVKFLSVMQRHGYIGEFEIIDDHRGGKIIVQLNGRLNKTGVISPRFNVQHNRIEQWINYLLPSRGIGIIVLTTSSGILDHEEARRKNVGGKL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS15A_DICDI (40S ribosomal protein S15a OS=Dictyostelium discoideum GN=rps15a PE=2 SV=3)

HSP 1 Score: 185.652 bits (470), Expect = 8.544e-47
Identity = 89/125 (71.20%), Postives = 107/125 (85.60%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            MVR+SVLND L S+ NAE++GKRQV++RPSSKVI+KFL VM K  YIGEFE VDDHR+GKIV++L GR+NKCGVISPRFDV + EIE W + LLPSRQFG+IVLTTS GIMDH EA+ ++ GGK+
Sbjct:    1 MVRISVLNDCLNSIVNAERQGKRQVLVRPSSKVIVKFLEVMMKKRYIGEFEIVDDHRSGKIVIDLIGRINKCGVISPRFDVTLDEIEKWASYLLPSRQFGHIVLTTSLGIMDHNEAKTRHTGGKL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS22_SCHPO (40S ribosomal protein S22 OS=Schizosaccharomyces pombe GN=rps22a PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 4.240e-46
Identity = 88/125 (70.40%), Postives = 105/125 (84.00%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            MVR SVL D L ++ NAE+RG+RQV+IRPSSKVI+KFL VMQKHGYI EF  +DDHR+GKIV++LNGR+NKCGVISPRF+V +K+IE W  +LLPSRQ G IVLTTS GIM H EAR K+ GGK+
Sbjct:    1 MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKI 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_CALMQ (30S ribosomal protein S8P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps8p PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.668e-32
Identity = 69/123 (56.10%), Postives = 88/123 (71.54%), Query Frame = -3
Query:   29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397
            MV + VL++AL S+ NAE RG RQV+I PSSK+I   L VMQ++GY+GEFEYV D R GK VV+L GR+N  G I PRF V V E++ W  + LP+RQ G ++LTTS G++ H EAR   VGG
Sbjct:    1 MVMLDVLSNALMSVKNAESRGDRQVIIWPSSKLIGNVLRVMQRYGYVGEFEYVYDGRGGKYVVQLLGRINDIGAIKPRFHVKVDELQKWEEKYLPARQVGILILTTSKGVVSHLEARENRVGG 123          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: R15A5_ARATH (40S ribosomal protein S15a-5 OS=Arabidopsis thaliana GN=RPS15AE PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.730e-31
Identity = 63/120 (52.50%), Postives = 89/120 (74.17%), Query Frame = -3
Query:   23 VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 382
            +LNDAL+++ NAE+RGK  V ++P S V+  FL +M++ GYI  F+  D HR G+I V+L GR+N C  ++ R DV  KEIE +T R LP+RQ+GY+V+TT  GI+DHEEA ++NVGG+V
Sbjct:    5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQV 124          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_PYRFU (30S ribosomal protein S8P OS=Pyrococcus furiosus GN=rps8p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.912e-30
Identity = 63/125 (50.40%), Postives = 89/125 (71.20%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            M  +  L +AL  + N+E+ GKR+V I+P+SK+I + L VMQK+GYIGEFE++DD RAG   V+L GR+NK G I PRF V V E E W  R LP+ +FG ++++TS G+M H+EA  K +GG++
Sbjct:    1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAGAIKPRFPVKVSEFEKWEKRFLPAFEFGILIVSTSQGVMSHKEAIEKGIGGRL 125          
The following BLAST results are available for this feature:
BLAST of GE213153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS15A_PONAB1.965e-5177.6040S ribosomal protein S15a OS=Pongo abelii GN=RPS1... [more]
RS15B_DROME2.567e-5177.6040S ribosomal protein S15Ab OS=Drosophila melanoga... [more]
RS15A_ICTPU2.838e-5077.4240S ribosomal protein S15a OS=Ictalurus punctatus ... [more]
RS15A_PARLI4.841e-5076.0040S ribosomal protein S15a OS=Paracentrotus lividu... [more]
RS22_AGABI3.469e-4873.6040S ribosomal protein S22 OS=Agaricus bisporus GN=... [more]
RS15A_DICDI8.544e-4771.2040S ribosomal protein S15a OS=Dictyostelium discoi... [more]
RS22_SCHPO4.240e-4670.4040S ribosomal protein S22 OS=Schizosaccharomyces p... [more]
RS8_CALMQ2.668e-3256.1030S ribosomal protein S8P OS=Caldivirga maquilinge... [more]
R15A5_ARATH1.730e-3152.5040S ribosomal protein S15a-5 OS=Arabidopsis thalia... [more]
RS8_PYRFU1.912e-3050.4030S ribosomal protein S8P OS=Pyrococcus furiosus G... [more]

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Properties
Property NameValue
Genbank descriptionC16 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213153 ID=GE213153; Name=GE213153; organism=Citrus sinensis; type=EST; length=465bp
ATTAGCGTGGTCGCGGCCGAGGTACTTTGCCACCAACATTCTTTCTCCTT
GCTTCTTCGTGATCCATGATACCAGCAGATGTTGTCAGGACAATATATCC
GAACTGTCTTGAAGGAAGCAATCTAGCCGTCCAGCCTTCAATCTCTTTCA
CACCAACATCGAAGCGAGGACTAATAACTCCACACTTGTTCAACCTTCCA
TTCAATTCAACCACAATCTTACCAGCTCTGTGGTCATCTACATACTCGAA
CTCACCAATGTAACCATGCTTCTGCATGACCAAAAGAAACTTGATAATCA
CTTTCGAGGATGGCCTGATCATGACCTGTCGCTTTCCTCTTTTCTCCGCA
TTATACATGCTCTTGAGAGCATCATTCAAGACACTAACTCGCACCATTCT
TCAAAATGAAGCTGAGCTCTACAACAGCGGCTGCGTTTTTGGGACCTCGG
CCGCGACCACGCTAA
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