GE213153

Overview
NameGE213153
Unique NameGE213153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_PYRAB (30S ribosomal protein S8P OS=Pyrococcus abyssi GN=rps8p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.498e-30
Identity = 61/125 (48.80%), Postives = 90/125 (72.00%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            M  +  L +AL  + N+E+ GKR+V I+P+SK+I + L VMQK+GYIGEFE++DD RAG   V+L G++NK G I PRF V  ++ E W  R LP+ +FG ++++TS G+M H+EAR K +GG++
Sbjct:    1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKGIGGRL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: R15A2_ARATH (40S ribosomal protein S15a-2 OS=Arabidopsis thaliana GN=RPS15AB PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.498e-30
Identity = 63/120 (52.50%), Postives = 87/120 (72.50%), Query Frame = -3
Query:   23 VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 382
            +LNDAL+++ NAEKRGK  V ++P S V+  FL +M++ GYI  F+  D HR G+I V+L GR+N C  ++ R DV   EI  +T R LP+RQ+GYIV+TT  GI+DHEEA ++NVGG+V
Sbjct:    5 ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQV 124          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METS5 (30S ribosomal protein S8P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps8p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.260e-30
Identity = 62/128 (48.44%), Postives = 90/128 (70.31%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            M  ++ L++AL S+YN E R  +Q +I PSSK+I+  L VMQK GY+GEFEY+DD R GKI+V+L GR+NKCG I+PR+ +  +E   +  +  R LPS++ G I+++T  G+M H+EA R+  GG V
Sbjct:    1 MTVINTLSNALSSLYNNEMRRNKQAIIMPSSKLIVNVLRVMQKEGYVGEFEYIDDGRWGKILVQLMGRINKCGAITPRYSLTYREMISLPDYIRRYLPSKEIGVIIVSTPKGVMTHKEAARQRTGGIV 128          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_PYRHO (30S ribosomal protein S8P OS=Pyrococcus horikoshii GN=rps8p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 5.564e-30
Identity = 61/125 (48.80%), Postives = 89/125 (71.20%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            M  +  L +AL  + N+E+ GKR++ I+P+SK+I + L VMQK+GYIGEFE++DD RAG   V+L GR+NK G I PRF V   E E W  R LP+ +FG ++++TS G+M H+EAR + +GG++
Sbjct:    1 MTLLDPLANALSHITNSERVGKREIYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAGAIKPRFPVKATEYEKWEKRFLPAFEFGILIVSTSQGVMSHKEARDRGIGGRL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_UNCMA (30S ribosomal protein S8P OS=Uncultured methanogenic archaeon RC-I GN=rps8p PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 7.267e-30
Identity = 61/125 (48.80%), Postives = 87/125 (69.60%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            MV +  L +AL  + NAE  GK   +I P+SK+I   L VMQ  GY+GEFE+VD+ +AG++ V+L G++NKCGV+ PRF VG  E+E W  R LP+R FG ++LTTS G+M H +A +  +GG++
Sbjct:    1 MVLMDPLANALSVIKNAETTGKTDCVIDPASKIIGNVLKVMQDQGYVGEFEFVDNGKAGQLKVKLIGKINKCGVVKPRFAVGKTEMEKWEKRYLPARNFGTLILTTSKGVMSHYDAAKMGIGGEI 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_PYRCJ (30S ribosomal protein S8P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.619e-29
Identity = 61/123 (49.59%), Postives = 87/123 (70.73%), Query Frame = -3
Query:   29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397
            MV + +L++AL ++ NAE  GKRQV+I P +K+I   L V+Q++GY+GE EY+DD R GK VV+L G++N  G I PRF V  +EI  W  + LP+RQ G +V++TS G+M H EA+ K +GG
Sbjct:    1 MVMLDLLSNALTAIKNAEAMGKRQVVIWPVNKLIYYTLRVLQRYGYVGEIEYIDDGRGGKYVVQLLGKINDIGAIRPRFPVKYREIVEWEQKYLPARQIGILVISTSQGVMSHLEAKEKKIGG 123          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_SULSO (30S ribosomal protein S8P OS=Sulfolobus solfataricus GN=rps8p PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.114e-29
Identity = 62/126 (49.21%), Postives = 89/126 (70.63%), Query Frame = -3
Query:   29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397
            MV V+ L +AL S+YN E R  +Q +I P+SK++I  L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ +  ++   +  +  R LPS++ G I+++TS G+M H+EA R  +GG
Sbjct:    1 MVFVNPLANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYVRRYLPSKEIGIIIVSTSKGVMSHKEAARLRIGG 126          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_THESM (30S ribosomal protein S8P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps8p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.606e-29
Identity = 62/125 (49.60%), Postives = 88/125 (70.40%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            M  +  L +AL  + N+EK GK +V I+P+SK+I + L VMQ++GYIGEFE++DD RAG   V+L G++NK G I PRF V  KE E W  R LP+ +FG +V++TS G+M H+EA  K +GG++
Sbjct:    1 MTLLDPLANALSHITNSEKVGKSEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLLGKVNKAGAIKPRFSVKAKEYEKWEKRFLPAFEFGILVVSTSQGVMTHKEALEKGIGGRL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_THEGJ (30S ribosomal protein S8P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps8p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.606e-29
Identity = 60/125 (48.00%), Postives = 89/125 (71.20%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            M  +  L +AL  + N+E+ GK++V I+P+SK+I + L VMQ++GYIGEFE++DD RAG   V+L G++NK G I PRF V  K  E W  R LP+ +FG ++++TS G+M H+EAR K +GG++
Sbjct:    1 MTLLDPLANALSHITNSERVGKKEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLIGKINKAGAIKPRFPVKAKNYEYWEKRFLPAFEFGILIVSTSQGVMTHKEAREKGIGGRL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_SULIY (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.606e-29
Identity = 62/126 (49.21%), Postives = 89/126 (70.63%), Query Frame = -3
Query:   29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397
            MV V+ L +AL S+YN E R  +Q +I P+SK++I  L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ +  ++   +  +  R LPS++ G I+++TS G+M H+EA R  +GG
Sbjct:    1 MVFVNPLANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGG 126          
The following BLAST results are available for this feature:
BLAST of GE213153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_PYRAB2.498e-3048.8030S ribosomal protein S8P OS=Pyrococcus abyssi GN=... [more]
R15A2_ARATH2.498e-3052.5040S ribosomal protein S15a-2 OS=Arabidopsis thalia... [more]
RS8_METS54.260e-3048.4430S ribosomal protein S8P OS=Metallosphaera sedula... [more]
RS8_PYRHO5.564e-3048.8030S ribosomal protein S8P OS=Pyrococcus horikoshii... [more]
RS8_UNCMA7.267e-3048.8030S ribosomal protein S8P OS=Uncultured methanogen... [more]
RS8_PYRCJ1.619e-2949.5930S ribosomal protein S8P OS=Pyrobaculum calidifon... [more]
RS8_SULSO2.114e-2949.2130S ribosomal protein S8P OS=Sulfolobus solfataric... [more]
RS8_THESM3.606e-2949.6030S ribosomal protein S8P OS=Thermococcus sibiricu... [more]
RS8_THEGJ3.606e-2948.0030S ribosomal protein S8P OS=Thermococcus gammatol... [more]
RS8_SULIY3.606e-2949.2130S ribosomal protein S8P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionC16 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213153 ID=GE213153; Name=GE213153; organism=Citrus sinensis; type=EST; length=465bp
ATTAGCGTGGTCGCGGCCGAGGTACTTTGCCACCAACATTCTTTCTCCTT
GCTTCTTCGTGATCCATGATACCAGCAGATGTTGTCAGGACAATATATCC
GAACTGTCTTGAAGGAAGCAATCTAGCCGTCCAGCCTTCAATCTCTTTCA
CACCAACATCGAAGCGAGGACTAATAACTCCACACTTGTTCAACCTTCCA
TTCAATTCAACCACAATCTTACCAGCTCTGTGGTCATCTACATACTCGAA
CTCACCAATGTAACCATGCTTCTGCATGACCAAAAGAAACTTGATAATCA
CTTTCGAGGATGGCCTGATCATGACCTGTCGCTTTCCTCTTTTCTCCGCA
TTATACATGCTCTTGAGAGCATCATTCAAGACACTAACTCGCACCATTCT
TCAAAATGAAGCTGAGCTCTACAACAGCGGCTGCGTTTTTGGGACCTCGG
CCGCGACCACGCTAA
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