GE213153
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_PYRAB (30S ribosomal protein S8P OS=Pyrococcus abyssi GN=rps8p PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 2.498e-30 Identity = 61/125 (48.80%), Postives = 90/125 (72.00%), Query Frame = -3 Query: 23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397 M + L +AL + N+E+ GKR+V I+P+SK+I + L VMQK+GYIGEFE++DD RAG V+L G++NK G I PRF V ++ E W R LP+ +FG ++++TS G+M H+EAR K +GG++ Sbjct: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKGIGGRL 125
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: R15A2_ARATH (40S ribosomal protein S15a-2 OS=Arabidopsis thaliana GN=RPS15AB PE=2 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 2.498e-30 Identity = 63/120 (52.50%), Postives = 87/120 (72.50%), Query Frame = -3 Query: 23 VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 382 +LNDAL+++ NAEKRGK V ++P S V+ FL +M++ GYI F+ D HR G+I V+L GR+N C ++ R DV EI +T R LP+RQ+GYIV+TT GI+DHEEA ++NVGG+V Sbjct: 5 ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQV 124
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METS5 (30S ribosomal protein S8P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps8p PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 4.260e-30 Identity = 62/128 (48.44%), Postives = 90/128 (70.31%), Query Frame = -3 Query: 23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397 M ++ L++AL S+YN E R +Q +I PSSK+I+ L VMQK GY+GEFEY+DD R GKI+V+L GR+NKCG I+PR+ + +E + + R LPS++ G I+++T G+M H+EA R+ GG V Sbjct: 1 MTVINTLSNALSSLYNNEMRRNKQAIIMPSSKLIVNVLRVMQKEGYVGEFEYIDDGRWGKILVQLMGRINKCGAITPRYSLTYREMISLPDYIRRYLPSKEIGVIIVSTPKGVMTHKEAARQRTGGIV 128
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_PYRHO (30S ribosomal protein S8P OS=Pyrococcus horikoshii GN=rps8p PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 5.564e-30 Identity = 61/125 (48.80%), Postives = 89/125 (71.20%), Query Frame = -3 Query: 23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397 M + L +AL + N+E+ GKR++ I+P+SK+I + L VMQK+GYIGEFE++DD RAG V+L GR+NK G I PRF V E E W R LP+ +FG ++++TS G+M H+EAR + +GG++ Sbjct: 1 MTLLDPLANALSHITNSERVGKREIYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAGAIKPRFPVKATEYEKWEKRFLPAFEFGILIVSTSQGVMSHKEARDRGIGGRL 125
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_UNCMA (30S ribosomal protein S8P OS=Uncultured methanogenic archaeon RC-I GN=rps8p PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 7.267e-30 Identity = 61/125 (48.80%), Postives = 87/125 (69.60%), Query Frame = -3 Query: 23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397 MV + L +AL + NAE GK +I P+SK+I L VMQ GY+GEFE+VD+ +AG++ V+L G++NKCGV+ PRF VG E+E W R LP+R FG ++LTTS G+M H +A + +GG++ Sbjct: 1 MVLMDPLANALSVIKNAETTGKTDCVIDPASKIIGNVLKVMQDQGYVGEFEFVDNGKAGQLKVKLIGKINKCGVVKPRFAVGKTEMEKWEKRYLPARNFGTLILTTSKGVMSHYDAAKMGIGGEI 125
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_PYRCJ (30S ribosomal protein S8P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps8p PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.619e-29 Identity = 61/123 (49.59%), Postives = 87/123 (70.73%), Query Frame = -3 Query: 29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397 MV + +L++AL ++ NAE GKRQV+I P +K+I L V+Q++GY+GE EY+DD R GK VV+L G++N G I PRF V +EI W + LP+RQ G +V++TS G+M H EA+ K +GG Sbjct: 1 MVMLDLLSNALTAIKNAEAMGKRQVVIWPVNKLIYYTLRVLQRYGYVGEIEYIDDGRGGKYVVQLLGKINDIGAIRPRFPVKYREIVEWEQKYLPARQIGILVISTSQGVMSHLEAKEKKIGG 123
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_SULSO (30S ribosomal protein S8P OS=Sulfolobus solfataricus GN=rps8p PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 2.114e-29 Identity = 62/126 (49.21%), Postives = 89/126 (70.63%), Query Frame = -3 Query: 29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397 MV V+ L +AL S+YN E R +Q +I P+SK++I L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ + ++ + + R LPS++ G I+++TS G+M H+EA R +GG Sbjct: 1 MVFVNPLANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYVRRYLPSKEIGIIIVSTSKGVMSHKEAARLRIGG 126
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_THESM (30S ribosomal protein S8P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps8p PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 3.606e-29 Identity = 62/125 (49.60%), Postives = 88/125 (70.40%), Query Frame = -3 Query: 23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397 M + L +AL + N+EK GK +V I+P+SK+I + L VMQ++GYIGEFE++DD RAG V+L G++NK G I PRF V KE E W R LP+ +FG +V++TS G+M H+EA K +GG++ Sbjct: 1 MTLLDPLANALSHITNSEKVGKSEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLLGKVNKAGAIKPRFSVKAKEYEKWEKRFLPAFEFGILVVSTSQGVMTHKEALEKGIGGRL 125
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_THEGJ (30S ribosomal protein S8P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps8p PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 3.606e-29 Identity = 60/125 (48.00%), Postives = 89/125 (71.20%), Query Frame = -3 Query: 23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397 M + L +AL + N+E+ GK++V I+P+SK+I + L VMQ++GYIGEFE++DD RAG V+L G++NK G I PRF V K E W R LP+ +FG ++++TS G+M H+EAR K +GG++ Sbjct: 1 MTLLDPLANALSHITNSERVGKKEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLIGKINKAGAIKPRFPVKAKNYEYWEKRFLPAFEFGILIVSTSQGVMTHKEAREKGIGGRL 125
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_SULIY (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps8p PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 3.606e-29 Identity = 62/126 (49.21%), Postives = 89/126 (70.63%), Query Frame = -3 Query: 29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397 MV V+ L +AL S+YN E R +Q +I P+SK++I L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ + ++ + + R LPS++ G I+++TS G+M H+EA R +GG Sbjct: 1 MVFVNPLANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGG 126 The following BLAST results are available for this feature:
BLAST of GE213153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 98
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Sequences
The
following sequences are available for this feature:
EST sequence >GE213153 ID=GE213153; Name=GE213153; organism=Citrus sinensis; type=EST; length=465bpback to top |