GE213153

Overview
NameGE213153
Unique NameGE213153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_SULIN (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps8p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.606e-29
Identity = 62/126 (49.21%), Postives = 89/126 (70.63%), Query Frame = -3
Query:   29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397
            MV V+ L +AL S+YN E R  +Q +I P+SK++I  L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ +  ++   +  +  R LPS++ G I+++TS G+M H+EA R  +GG
Sbjct:    1 MVFVNPLANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGG 126          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_SULIM (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.606e-29
Identity = 62/126 (49.21%), Postives = 89/126 (70.63%), Query Frame = -3
Query:   29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397
            MV V+ L +AL S+YN E R  +Q +I P+SK++I  L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ +  ++   +  +  R LPS++ G I+++TS G+M H+EA R  +GG
Sbjct:    1 MVFVNPLANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGG 126          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_SULIL (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.606e-29
Identity = 62/126 (49.21%), Postives = 89/126 (70.63%), Query Frame = -3
Query:   29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397
            MV V+ L +AL S+YN E R  +Q +I P+SK++I  L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ +  ++   +  +  R LPS++ G I+++TS G+M H+EA R  +GG
Sbjct:    1 MVFVNPLANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGG 126          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_SULIK (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps8p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.606e-29
Identity = 62/126 (49.21%), Postives = 89/126 (70.63%), Query Frame = -3
Query:   29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397
            MV V+ L +AL S+YN E R  +Q +I P+SK++I  L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ +  ++   +  +  R LPS++ G I+++TS G+M H+EA R  +GG
Sbjct:    1 MVFVNPLANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGG 126          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_SULIA (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain M.16.27) GN=rps8p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.606e-29
Identity = 62/126 (49.21%), Postives = 89/126 (70.63%), Query Frame = -3
Query:   29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397
            MV V+ L +AL S+YN E R  +Q +I P+SK++I  L VMQK GY+GEFEY+DD R GKI V+L GR+NKCG I+PR+ +  ++   +  +  R LPS++ G I+++TS G+M H+EA R  +GG
Sbjct:    1 MVFVNPLANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGG 126          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METBU (30S ribosomal protein S8P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps8p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.606e-29
Identity = 63/125 (50.40%), Postives = 82/125 (65.60%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            MV +  L DAL  + NAE  GK    IRP+SK+I   L VM   GYIG+FE+V+D +AG   VEL GR+NKCG I PR+ VGV E E W  + LP++ FG ++LTT  G++   EAR  NVGG++
Sbjct:    1 MVLLDPLADALSIIKNAEAVGKDSCTIRPASKLIGNVLKVMNDRGYIGDFEFVEDGKAGVYTVELIGRINKCGAIKPRYSVGVTEFERWEKQFLPAKNFGVLILTTPKGVISQYEARENNVGGQL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_SULAC (30S ribosomal protein S8P OS=Sulfolobus acidocaldarius GN=rps8p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 4.710e-29
Identity = 60/126 (47.62%), Postives = 88/126 (69.84%), Query Frame = -3
Query:   29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDV---GVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397
            M  ++ L +AL ++YN E R  +Q +I P+SK+II  L VMQK GYIGEFEY+DD RAGKI+V+L GR+NKCG ISPR+ +   G+  +  +  + LPS++ G I+++T  G+M H +  R+ +GG
Sbjct:    1 MPSINPLANALATLYNNEMRRNKQALITPASKLIISVLRVMQKEGYIGEFEYIDDGRAGKIIVQLLGRINKCGPISPRYPLDYNGLLRLPDYIRKYLPSKEIGIIIISTPKGVMSHRDGIREKIGG 126          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_THENV (30S ribosomal protein S8P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps8p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.152e-29
Identity = 60/123 (48.78%), Postives = 85/123 (69.11%), Query Frame = -3
Query:   29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397
            MV + +L++AL  + NAE  GKRQV I P +K+I   L V+Q+HGY+GE EY+DD R GK VV+L G++N  G I PR+ V  +EI  W  + LP+RQ G +V++T+ G+M H EA+ K +GG
Sbjct:    1 MVMLDLLSNALIQIKNAEAMGKRQVAIWPVNKLIYYTLRVLQRHGYVGEVEYIDDGRGGKYVVQLLGKINDIGPIKPRYPVKYREIVQWEQKFLPARQIGILVISTNQGVMSHVEAKEKKIGG 123          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_THEON (30S ribosomal protein S8P OS=Thermococcus onnurineus (strain NA1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.034e-29
Identity = 59/125 (47.20%), Postives = 89/125 (71.20%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            M  +  L +AL  + N+E+ GK++V I+P+SK+I + L VMQ++GYIGEFE++DD RAG   V+L G++NK G I PRF V  +E E W  R LP+ +FG ++++TS G+M H+EA  K +GG++
Sbjct:    1 MTLLDPLANALSHITNSERVGKKEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLIGKINKAGAIKPRFPVKAREYEAWEKRFLPAFEFGILIVSTSQGVMTHKEAIEKGIGGRL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METTP (30S ribosomal protein S8P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps8p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.034e-29
Identity = 58/117 (49.57%), Postives = 83/117 (70.94%), Query Frame = -3
Query:   29 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 379
            L DA+ ++ NAE  GK + +I+P+SK+I   L VM   GYIGEFE++DD ++G   V+L GR+N+CGVI PRF + V E+E W  R LP+R FG ++L+TS G+M H +AR + +GG
Sbjct:    6 LADAMSTIKNAENVGKPECIIKPASKLIAMTLKVMADLGYIGEFEFIDDGKSGMFKVKLLGRINRCGVIKPRFAIKVAELEKWERRFLPARNFGVLILSTSQGVMPHTDARARGIGG 122          
The following BLAST results are available for this feature:
BLAST of GE213153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_SULIN3.606e-2949.2130S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIM3.606e-2949.2130S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIL3.606e-2949.2130S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIK3.606e-2949.2130S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIA3.606e-2949.2130S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_METBU3.606e-2950.4030S ribosomal protein S8P OS=Methanococcoides burt... [more]
RS8_SULAC4.710e-2947.6230S ribosomal protein S8P OS=Sulfolobus acidocalda... [more]
RS8_THENV6.152e-2948.7830S ribosomal protein S8P OS=Thermoproteus neutrop... [more]
RS8_THEON8.034e-2947.2030S ribosomal protein S8P OS=Thermococcus onnurine... [more]
RS8_METTP8.034e-2949.5730S ribosomal protein S8P OS=Methanosaeta thermoph... [more]

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Properties
Property NameValue
Genbank descriptionC16 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213153 ID=GE213153; Name=GE213153; organism=Citrus sinensis; type=EST; length=465bp
ATTAGCGTGGTCGCGGCCGAGGTACTTTGCCACCAACATTCTTTCTCCTT
GCTTCTTCGTGATCCATGATACCAGCAGATGTTGTCAGGACAATATATCC
GAACTGTCTTGAAGGAAGCAATCTAGCCGTCCAGCCTTCAATCTCTTTCA
CACCAACATCGAAGCGAGGACTAATAACTCCACACTTGTTCAACCTTCCA
TTCAATTCAACCACAATCTTACCAGCTCTGTGGTCATCTACATACTCGAA
CTCACCAATGTAACCATGCTTCTGCATGACCAAAAGAAACTTGATAATCA
CTTTCGAGGATGGCCTGATCATGACCTGTCGCTTTCCTCTTTTCTCCGCA
TTATACATGCTCTTGAGAGCATCATTCAAGACACTAACTCGCACCATTCT
TCAAAATGAAGCTGAGCTCTACAACAGCGGCTGCGTTTTTGGGACCTCGG
CCGCGACCACGCTAA
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