GE213153

Overview
NameGE213153
Unique NameGE213153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_SULTO (30S ribosomal protein S8P OS=Sulfolobus tokodaii GN=rps8p PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.049e-28
Identity = 59/126 (46.83%), Postives = 91/126 (72.22%), Query Frame = -3
Query:   29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397
            MV ++ L +AL ++YN E R  +Q +I P+SK+II  L  MQK GYIGEFE++DD R+GKIVV+L GR+NKCG I+PR+ +  K+   +  +  R LPS++ G ++++T+ G+M H++A R+ +GG
Sbjct:    1 MVNLNPLANALTTIYNNEMRRNKQAIIMPASKLIINVLRAMQKEGYIGEFEFIDDGRSGKIVVQLLGRINKCGPIAPRYPLKYKDLLTLPDYVRRYLPSKEIGVLIISTNKGVMTHKDAIRERIGG 126          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_KORCO (30S ribosomal protein S8P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps8p PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.049e-28
Identity = 61/123 (49.59%), Postives = 82/123 (66.67%), Query Frame = -3
Query:   29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397
            M R+  L DA+ ++ N    GKR+V+I  +SK+I K L V+++HGYI EFEYVDD R GK VV LNGR+NK GVI PRF V V E   W    LP+   G I+++T+ G+M H EA+ + +GG
Sbjct:    1 MTRLDPLADAMSTLTNGSMLGKREVVINIASKLIGKVLKVLKEHGYIDEFEYVDDGRFGKYVVRLNGRINKAGVIKPRFPVKVGEFSRWEKIYLPAENVGLIIVSTNQGVMTHREAKERGIGG 123          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_HYPBU (30S ribosomal protein S8P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps8p PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.370e-28
Identity = 62/126 (49.21%), Postives = 85/126 (67.46%), Query Frame = -3
Query:   29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEI---EGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397
            MV +  L +A+ ++ NAE R K +V+I P+SK+I   L VMQ+ GYIGEFEY+DD R GKI V L GR+NK GVI PRF V  K++     W  + LPSR  G ++++TS G+M H EA ++ +GG
Sbjct:    1 MVMLDTLANAMAAIVNAEMRAKPEVIIMPASKLIANVLRVMQREGYIGEFEYIDDGRWGKIRVRLLGRINKAGVIKPRFSVKYKDLIRMPDWLRKYLPSRDIGILIISTSQGVMSHREAIQRRIGG 126          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METPE (30S ribosomal protein S8P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps8p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.987e-28
Identity = 54/125 (43.20%), Postives = 85/125 (68.00%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            M R + + DA+ ++ NA   GK + ++ PSSK++   L +MQ  GYIG F+ +DD R G+  V L+GR+NKCG I+PR+ VG+ E+E W  R LP + FG ++L+TS G++ H +AR+  +GG++
Sbjct:    1 MSRQNTIADAMSALKNAGDCGKPECILEPSSKLLGAMLRIMQDAGYIGSFDMIDDGRGGQFRVHLSGRINKCGAITPRYSVGLDELEYWETRYLPGKNFGLLILSTSRGVLTHNQARQNGIGGEL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METBF (30S ribosomal protein S8P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps8p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.987e-28
Identity = 61/125 (48.80%), Postives = 83/125 (66.40%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            MV +  L +AL ++ NAE  GK   +IRP+SK I   L VMQ  GYIGEFE++DD +AG   V L GR+NKCG I PR+ VG    E W  + LP++ FG +++TTS+G+M   EAR K +GG++
Sbjct:    1 MVLLDPLANALSTIKNAEAIGKSSCIIRPASKNIGNVLKVMQDLGYIGEFEFIDDGKAGIYSVTLVGRVNKCGAIKPRYSVGTGSFERWEKQFLPAKNFGALIITTSSGVMSQYEAREKKIGGQL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METIG (30S ribosomal protein S8P OS=Methanococcus igneus GN=rps8p PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.208e-28
Identity = 59/119 (49.58%), Postives = 83/119 (69.75%), Query Frame = -3
Query:   23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379
            L +AL  + N E+ GK+   I+P+SK+I + L VMQ HGYIGEFE+++D RAG   VEL G++NKCG I PR+ V   E E +  R LP+R FG ++++TS GIM H EA+ K +GG++
Sbjct:    7 LANALNHLTNCERVGKKVFYIKPASKLIGRVLKVMQDHGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRYAVKKHEFEKFEKRYLPARDFGLLIVSTSQGIMTHYEAKEKGIGGRL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_PYRIL (30S ribosomal protein S8P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps8p PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.802e-28
Identity = 58/123 (47.15%), Postives = 86/123 (69.92%), Query Frame = -3
Query:   29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397
            MV + +L++AL  + NAE  GK+QV+I P +K+I   L V+Q++GY+GE EY+DD R GK VV+L G++N  G I PR+ V  +EI  W  + LP+RQ G +V++TS G+M H EA+ + +GG
Sbjct:    1 MVMLDLLSNALIQIKNAEIMGKKQVVIWPVNKLIYHTLRVLQRYGYVGEIEYIDDGRGGKYVVQLLGKINDIGPIRPRYPVKYREIVQWEQKFLPARQIGILVISTSQGVMSHIEAKERKIGG 123          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METLZ (30S ribosomal protein S8P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps8p PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.802e-28
Identity = 57/125 (45.60%), Postives = 85/125 (68.00%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            M + + + DA+ ++ NA   GK  V + P+S++    L VMQ++GYI  FE +DD R G+  + L+G +NKCGVI+PRF V V+++E W  R LP + FG I+LTTS G+M HE+AR+  VGG++
Sbjct:    1 MTKQNPIADAMSAIKNAGDTGKLAVTVEPASRLFGDMLKVMQEYGYITGFEKIDDGRGGQFQIALSGGINKCGVITPRFSVKVEDLESWEIRYLPGKGFGIIILTTSKGVMSHEQARKLGVGGEL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METMA (30S ribosomal protein S8P OS=Methanosarcina mazei GN=rps8p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 8.883e-28
Identity = 60/125 (48.00%), Postives = 83/125 (66.40%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            MV +  L +AL ++ NAE  GK   ++RP+SK I   L VMQ  GYIG+FE++DD +AG   V L GR+NKCG I PR+ VG    E W  + LP++ FG ++LTTS+G+M   EAR K +GG++
Sbjct:    1 MVLLDPLANALSTIKNAEAIGKSSCIVRPASKNIGNVLKVMQDLGYIGDFEFIDDGKAGIYSVTLVGRINKCGAIKPRYSVGTGSFERWEKQFLPAKNFGALILTTSSGVMSQYEARDKKIGGQL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METKA (30S ribosomal protein S8P OS=Methanopyrus kandleri GN=rps8p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 8.883e-28
Identity = 57/125 (45.60%), Postives = 85/125 (68.00%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            M  +  L DA+ ++ N E  G ++ +I P+SK+I + L VMQ++GYIG FE++DD R+GK +V+L GR+N CGVI PR  V   E E W  R LP+R FG +++TT  G+M H EA+ + +GG++
Sbjct:    1 MTLMDPLADAMATIKNNEMVGNKECVIEPASKLIGRVLKVMQEYGYIGSFEFIDDGRSGKFLVKLVGRINDCGVIKPRHPVKKDEWEYWEQRYLPARDFGLLIVTTPEGVMSHYEAKERGIGGRL 125          
The following BLAST results are available for this feature:
BLAST of GE213153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_SULTO1.049e-2846.8330S ribosomal protein S8P OS=Sulfolobus tokodaii G... [more]
RS8_KORCO1.049e-2849.5930S ribosomal protein S8P OS=Korarchaeum cryptofil... [more]
RS8_HYPBU1.370e-2849.2130S ribosomal protein S8P OS=Hyperthermus butylicu... [more]
RS8_METPE3.987e-2843.2030S ribosomal protein S8P OS=Methanosphaerula palu... [more]
RS8_METBF3.987e-2848.8030S ribosomal protein S8P OS=Methanosarcina barker... [more]
RS8_METIG5.208e-2849.5830S ribosomal protein S8P OS=Methanococcus igneus ... [more]
RS8_PYRIL6.802e-2847.1530S ribosomal protein S8P OS=Pyrobaculum islandicu... [more]
RS8_METLZ6.802e-2845.6030S ribosomal protein S8P OS=Methanocorpusculum la... [more]
RS8_METMA8.883e-2848.0030S ribosomal protein S8P OS=Methanosarcina mazei ... [more]
RS8_METKA8.883e-2845.6030S ribosomal protein S8P OS=Methanopyrus kandleri... [more]

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Properties
Property NameValue
Genbank descriptionC16 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213153 ID=GE213153; Name=GE213153; organism=Citrus sinensis; type=EST; length=465bp
ATTAGCGTGGTCGCGGCCGAGGTACTTTGCCACCAACATTCTTTCTCCTT
GCTTCTTCGTGATCCATGATACCAGCAGATGTTGTCAGGACAATATATCC
GAACTGTCTTGAAGGAAGCAATCTAGCCGTCCAGCCTTCAATCTCTTTCA
CACCAACATCGAAGCGAGGACTAATAACTCCACACTTGTTCAACCTTCCA
TTCAATTCAACCACAATCTTACCAGCTCTGTGGTCATCTACATACTCGAA
CTCACCAATGTAACCATGCTTCTGCATGACCAAAAGAAACTTGATAATCA
CTTTCGAGGATGGCCTGATCATGACCTGTCGCTTTCCTCTTTTCTCCGCA
TTATACATGCTCTTGAGAGCATCATTCAAGACACTAACTCGCACCATTCT
TCAAAATGAAGCTGAGCTCTACAACAGCGGCTGCGTTTTTGGGACCTCGG
CCGCGACCACGCTAA
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