GE213153

Overview
NameGE213153
Unique NameGE213153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_THEPD (30S ribosomal protein S8P OS=Thermofilum pendens (strain Hrk 5) GN=rps8p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.160e-27
Identity = 58/120 (48.33%), Postives = 80/120 (66.67%), Query Frame = -3
Query:   29 VSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 388
            +  L +AL ++ N E RGK+Q +I PSSK+I+  L  +++ GYIG+FE +DD R GKIVV L GR+NK GVI PR+ V   E E W    LPSR  G ++++T  G+M H EA+ K +GG
Sbjct:    3 LDTLANALSTIMNNEVRGKKQCVIYPSSKLIVAVLDTLKRSGYIGDFELIDDGRGGKIVVNLLGRINKIGVIKPRYPVKKNEFEAWEREYLPSRDVGLLIVSTPKGVMTHREAKEKGLGG 122          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METMJ (30S ribosomal protein S8P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.160e-27
Identity = 52/125 (41.60%), Postives = 90/125 (72.00%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            M R++ + DA+ ++ NA   GK +V++ P+SK++   L VMQ++G+I  FE++DD R G+  V+L+G +NKCG ISPRF V + ++E W ++ LP++ FG ++++TS G++ H EAR + +GG++
Sbjct:    1 MARLNPIADAMSTIKNAGDAGKGEVIVEPASKLLGAMLRVMQENGFISGFEFIDDGRGGQFRVQLSGTINKCGAISPRFPVAMADMEYWESQYLPAKNFGILIVSTSKGVISHAEARNEGIGGQL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_PYRAR (30S ribosomal protein S8P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps8p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.515e-27
Identity = 58/123 (47.15%), Postives = 84/123 (68.29%), Query Frame = -3
Query:   29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397
            MV + +L++AL  + NAE  GKRQV I P +K+    L V+Q++GY+GE EYVDD R GK +V+L G++N  G I PR+ V  +EI  W  + LP+RQ G +V++TS G++ H EA+ K +GG
Sbjct:    1 MVMLDILSNALIQIKNAEVMGKRQVTIWPVNKLTYYTLRVLQRYGYVGEIEYVDDGRGGKYIVQLLGKINDIGPIRPRYPVKYREIVQWEQKFLPARQIGILVISTSQGVVSHIEAKEKKIGG 123          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METTH (30S ribosomal protein S8P OS=Methanobacterium thermoautotrophicum GN=rps8p PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.515e-27
Identity = 61/125 (48.80%), Postives = 83/125 (66.40%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            M  +  L +AL ++ N E RG  +  I P+SK+I + L  MQK GYIGEFEYVDD RAGK +VEL G +N CGVI PR  V   E E +  R LP++ FG I+++T  GIM H+EA+ + +GG++
Sbjct:    1 MTLMDPLANALTNIRNNEIRGNVKCRITPASKLIGRVLRTMQKEGYIGEFEYVDDGRAGKFIVELEGNINHCGVIKPRHAVKKDEFEKFEKRYLPAKNFGIIIVSTPEGIMTHKEAKDRGIGGRL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METAC (30S ribosomal protein S8P OS=Methanosarcina acetivorans GN=rps8p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.515e-27
Identity = 59/125 (47.20%), Postives = 83/125 (66.40%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            MV +  L +AL ++ NAE  GK   ++RP+SK I   L VMQ  GYIG+FE++DD +AG   V L GR+NKCG I PR+ VG    E W  + LP++ FG +++TTS+G+M   EAR K +GG++
Sbjct:    1 MVLLDPLANALSTIKNAEAIGKSSCVVRPASKNIGNVLKVMQDLGYIGDFEFIDDGKAGIYSVTLVGRINKCGAIKPRYSVGTASFERWEKQFLPAKNFGALIVTTSSGVMSQYEARDKKIGGQL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_IGNH4 (30S ribosomal protein S8P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps8p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.515e-27
Identity = 60/126 (47.62%), Postives = 84/126 (66.67%), Query Frame = -3
Query:   29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKE---IEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397
            MV +  L +AL ++YN E RG ++ +I P+SK+I   L +MQK GY+GEFEY+DD R GKI V L GR+NKCG I PR  V  ++   +     R LPS+  G ++++TS G+M H+EA +K VGG
Sbjct:    1 MVMLDTLANALTTIYNNEVRGNKEAIIMPASKLIANVLRIMQKEGYVGEFEYIDDGRWGKIRVRLLGRINKCGAIKPRVSVSYRDLLVLPEHLRRFLPSKDVGILIISTSQGLMTHKEAIQKRVGG 126          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_STAMF (30S ribosomal protein S8P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.979e-27
Identity = 61/126 (48.41%), Postives = 85/126 (67.46%), Query Frame = -3
Query:   29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIE---GWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397
            MV +  L +AL ++ NAE R K + +I P+SK+II  L VMQ+ GYIGEFEY+DD R GKI V+L GR+NK GVI PRF V ++++E    W  + LP+   G ++L+T  G++ H+EA  K  GG
Sbjct:    1 MVMLDTLANALATIQNAEMRAKSEALIWPASKLIINVLRVMQREGYIGEFEYIDDGRWGKIKVQLLGRINKTGVIKPRFPVKLRDLERMPHWLRKYLPAYNIGILILSTPHGVLSHKEAIAKKTGG 126          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METB6 (30S ribosomal protein S8P OS=Methanoregula boonei (strain 6A8) GN=rps8p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.376e-27
Identity = 53/125 (42.40%), Postives = 84/125 (67.20%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            M R++ + D + ++ NA   GK +V I P+SK++   L +MQ  GYI  FE+++D R G++ V L G++NKCG I PRF V + E+E W  + LP + FG ++L+TS G+M H +ARR+ +GG++
Sbjct:    1 MTRLNTIADGMSALKNAGDTGKSEVTIEPASKLLGAMLRIMQDAGYIAGFEFIEDGRGGQLKVHLTGKINKCGAICPRFSVQLDEMEYWEKQYLPGKNFGLMILSTSHGVMSHVQARREGIGGEL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_PYRKO (30S ribosomal protein S8P OS=Pyrococcus kodakaraensis GN=rps8p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.409e-27
Identity = 57/125 (45.60%), Postives = 87/125 (69.60%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            M  +  L +AL  + N+E+ GK++V I+P+SK+I + L VM ++GYIGEFE +DD RAG   V+L G++NK G I PRF V  ++ E W  R LP+ +FG ++++TS G+M H+EA  K +GG++
Sbjct:    1 MTLLDPLANALSHITNSERVGKKEVYIKPASKLIGEVLRVMLENGYIGEFELIDDGRAGIYRVQLIGKINKAGAIKPRFPVKARDYEKWEKRFLPAFEFGILIVSTSQGVMTHKEALEKGIGGRL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METJA (30S ribosomal protein S8P OS=Methanocaldococcus jannaschii GN=rps8p PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.409e-27
Identity = 57/119 (47.90%), Postives = 85/119 (71.43%), Query Frame = -3
Query:   23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379
            L +AL  + N E+ GK+ V I+P+SK+I + L VMQ +GYIGEFE+++D RAG   VEL G++NKCG I PRF V     E +  R LP+R FG ++++T+ G+M HEEA+++ +GG++
Sbjct:    7 LANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRFPVKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRL 125          
The following BLAST results are available for this feature:
BLAST of GE213153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_THEPD1.160e-2748.3330S ribosomal protein S8P OS=Thermofilum pendens (... [more]
RS8_METMJ1.160e-2741.6030S ribosomal protein S8P OS=Methanoculleus marisn... [more]
RS8_PYRAR1.515e-2747.1530S ribosomal protein S8P OS=Pyrobaculum arsenatic... [more]
RS8_METTH1.515e-2748.8030S ribosomal protein S8P OS=Methanobacterium ther... [more]
RS8_METAC1.515e-2747.2030S ribosomal protein S8P OS=Methanosarcina acetiv... [more]
RS8_IGNH41.515e-2747.6230S ribosomal protein S8P OS=Ignicoccus hospitalis... [more]
RS8_STAMF1.979e-2748.4130S ribosomal protein S8P OS=Staphylothermus marin... [more]
RS8_METB63.376e-2742.4030S ribosomal protein S8P OS=Methanoregula boonei ... [more]
RS8_PYRKO4.409e-2745.6030S ribosomal protein S8P OS=Pyrococcus kodakaraen... [more]
RS8_METJA4.409e-2747.9030S ribosomal protein S8P OS=Methanocaldococcus ja... [more]

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Properties
Property NameValue
Genbank descriptionC16 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213153 ID=GE213153; Name=GE213153; organism=Citrus sinensis; type=EST; length=465bp
ATTAGCGTGGTCGCGGCCGAGGTACTTTGCCACCAACATTCTTTCTCCTT
GCTTCTTCGTGATCCATGATACCAGCAGATGTTGTCAGGACAATATATCC
GAACTGTCTTGAAGGAAGCAATCTAGCCGTCCAGCCTTCAATCTCTTTCA
CACCAACATCGAAGCGAGGACTAATAACTCCACACTTGTTCAACCTTCCA
TTCAATTCAACCACAATCTTACCAGCTCTGTGGTCATCTACATACTCGAA
CTCACCAATGTAACCATGCTTCTGCATGACCAAAAGAAACTTGATAATCA
CTTTCGAGGATGGCCTGATCATGACCTGTCGCTTTCCTCTTTTCTCCGCA
TTATACATGCTCTTGAGAGCATCATTCAAGACACTAACTCGCACCATTCT
TCAAAATGAAGCTGAGCTCTACAACAGCGGCTGCGTTTTTGGGACCTCGG
CCGCGACCACGCTAA
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