GE213153

Overview
NameGE213153
Unique NameGE213153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_DESK1 (30S ribosomal protein S8P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps8p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.675e-26
Identity = 58/126 (46.03%), Postives = 85/126 (67.46%), Query Frame = -3
Query:   29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEI---EGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397
            MV +  L +AL ++YNAE R K++V++ P+SK+ +  L V+Q+ GYIGEFEY+DD R GKI ++L GR+NK GVI PR+ V  +E+     W  R LP+   G I+++T  G++ H+EA  K  GG
Sbjct:    1 MVVMDTLANALSAIYNAEIRAKKEVVVWPASKLTLNVLKVLQREGYIGEFEYIDDGRWGKIKIQLLGRINKIGVIKPRYPVKHRELAEFPEWLKRYLPAYNIGVIIVSTPYGVLSHKEAVEKQTGG 126          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_PYRAE (30S ribosomal protein S8P OS=Pyrobaculum aerophilum GN=rps8p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.732e-26
Identity = 53/123 (43.09%), Postives = 84/123 (68.29%), Query Frame = -3
Query:   29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397
            MV + +L++AL  + NAE  GK+Q +I P +K+    L V+Q++GY+GE EY+DD + GK +V+L G++N  G I PR+ V  +EI  W  + LP+RQ G ++++TS G+M H EA+ + +GG
Sbjct:    1 MVMLDILSNALIQIKNAEIVGKKQAVIWPVNKLTYYTLRVLQRYGYVGEIEYIDDGKGGKYIVQLLGKINDIGPIRPRYPVKYREIVQWEQKFLPARQIGILIISTSQGVMSHIEAKERKIGG 123          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_THEAC (30S ribosomal protein S8P OS=Thermoplasma acidophilum GN=rps8p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.366e-26
Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = -3
Query:   23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379
            LND + S+ NA + GKR+++  P++K+I K L VMQ + YI  FE +D+ R GK  + LN  +N CGVI PRF V  + +E + AR LP+  FG ++LTT+ G+M + EAR+  +GGK+
Sbjct:    6 LNDVINSIKNASRLGKREIIAEPAAKLIGKVLKVMQDYNYIKSFEVIDESRGGKFKIVLNTTINNCGVIKPRFPVKNENLEKYEARYLPAEDFGILILTTTKGVMSNIEARKLGIGGKL 124          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METS3 (30S ribosomal protein S8P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps8p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.366e-26
Identity = 57/119 (47.90%), Postives = 79/119 (66.39%), Query Frame = -3
Query:   23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379
            L DAL ++ N E + K   +I P+SK+I + L  MQK  YIG FEY+DD+RAG+  VEL G +NKCGVI PR  V   E E +  R LP++ FG +++TT  GIM H EA+ + +GG++
Sbjct:    7 LADALTNIRNNELQVKDSCVISPASKLIGEVLSTMQKENYIGNFEYIDDNRAGQFKVELEGNINKCGVIKPRHAVKKDEFEKFEKRYLPAKNFGILIVTTPEGIMTHYEAKERGIGGRL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_HALLT (30S ribosomal protein S8P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps8p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.086e-25
Identity = 53/117 (45.30%), Postives = 73/117 (62.39%), Query Frame = -3
Query:   23 DALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 373
            +AL  M NAE  G     + P+S +I   L V+   GY+  FEYVDD +AGK  VEL G +N+CG + PR+  G  E E W  R LP+R +G +++TTS G+M H EAR + +GG+V
Sbjct:    9 NALAGMDNAESVGHLSYTVEPASNIIGSVLEVLYDRGYVDGFEYVDDGKAGKFEVELKGAINECGAVKPRYSAGADEFEKWEKRYLPARDYGTLIVTTSHGVMSHYEAREEGIGGQV 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_ARCFU (30S ribosomal protein S8P OS=Archaeoglobus fulgidus GN=rps8p PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.086e-25
Identity = 53/120 (44.17%), Postives = 84/120 (70.00%), Query Frame = -3
Query:   29 VSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 388
            V  L++A+ ++ NAE  G+++  I+P+SK+I   L VM+ +GYI  FEYV++HR GK +VEL+G +N CG I PRF   V E E +  R LP+R FG ++++T+ G+M  ++AR++ +GG
Sbjct:    3 VDTLSNAMIAIKNAEMVGEKKCEIKPASKLIGNVLKVMKDYGYIKGFEYVENHRGGKFIVELSGNINDCGAIRPRFSSSVTEYEMYEKRYLPARDFGILIVSTTKGVMSQKDARKQRLGG 122          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_THEVO (30S ribosomal protein S8P OS=Thermoplasma volcanium GN=rps8p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.418e-25
Identity = 53/124 (42.74%), Postives = 82/124 (66.13%), Query Frame = -3
Query:   23 VRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 394
            +R   LND + S+ NA + G+R+++  P++K+I K L VMQ + YI  FE +D+ R GK  + LN  +N CGVI PRF V  + +E + +R LP+  FG ++LTT+ G+M + EAR+  +GGK+
Sbjct:    1 MRNDTLNDVINSIKNASRLGRREIIAEPAAKLIGKVLKVMQDYNYIKSFEVIDESRGGKFKIVLNTTINNCGVIKPRFPVKNENLEKYESRYLPAEDFGILILTTTKGVMSNIEARKLGIGGKL 124          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METTL (30S ribosomal protein S8P OS=Methanococcus thermolithotrophicus GN=rps8p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.126e-25
Identity = 53/119 (44.54%), Postives = 81/119 (68.07%), Query Frame = -3
Query:   23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379
            L +AL  + N E  GK    ++P+SK+I + L VMQ HGYIG FEY++D RAG   VEL G++NKCG + PR+ V  +E E +  R LP++ FG ++++T  G+M H+EA+ + +GG++
Sbjct:    7 LANALNHISNCEGVGKSVAYVKPASKLIGRVLNVMQDHGYIGNFEYIEDGRAGIYKVELIGQINKCGAVKPRYAVKKQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKNQGLGGRL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_PICTO (30S ribosomal protein S8P OS=Picrophilus torridus GN=rps8p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.389e-25
Identity = 55/119 (46.22%), Postives = 79/119 (66.39%), Query Frame = -3
Query:   23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379
            LND + ++ NA + GK +V+I P+S +I + L VMQ + YI  FE +++ R GK  VEL+  +N CGVI PR  V    IE + +R LP++ FG I+LTT+ GIM H EAR+  +GGK+
Sbjct:    6 LNDVINTIKNASRIGKSEVIIGPASVMIGRILKVMQDYNYIKSFEVIEEERGGKFRVELSDTINNCGVIKPRLSVKNSNIERYESRYLPAQDFGIIILTTTKGIMSHIEARKLGIGGKL 124          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_NITMS (30S ribosomal protein S8P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.568e-24
Identity = 52/123 (42.28%), Postives = 77/123 (62.60%), Query Frame = -3
Query:   29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397
            M   ++L +   ++YN E R K +  I P+SK+ I+ L  +QK GYIGEFE++DD R GK  ++L  ++ KCG ISPRF V   E   W  + LP+   G +++TT+ G+M H EA +K +GG
Sbjct:    1 MPATNILANLFVTLYNNETRRKGECTILPTSKLGIEVLKTLQKDGYIGEFEHIDDKRGGKFKIKLLAKITKCGAISPRFKVKTDEFNNWEQQYLPAYDRGMLLVTTNQGVMSHHEATQKGIGG 123          
The following BLAST results are available for this feature:
BLAST of GE213153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_DESK11.675e-2646.0330S ribosomal protein S8P OS=Desulfurococcus kamch... [more]
RS8_PYRAE3.732e-2643.0930S ribosomal protein S8P OS=Pyrobaculum aerophilu... [more]
RS8_THEAC6.366e-2645.3830S ribosomal protein S8P OS=Thermoplasma acidophi... [more]
RS8_METS36.366e-2647.9030S ribosomal protein S8P OS=Methanobrevibacter sm... [more]
RS8_HALLT1.086e-2545.3030S ribosomal protein S8P OS=Halorubrum lacusprofu... [more]
RS8_ARCFU1.086e-2544.1730S ribosomal protein S8P OS=Archaeoglobus fulgidu... [more]
RS8_THEVO1.418e-2542.7430S ribosomal protein S8P OS=Thermoplasma volcaniu... [more]
RS8_METTL4.126e-2544.5430S ribosomal protein S8P OS=Methanococcus thermol... [more]
RS8_PICTO5.389e-2546.2230S ribosomal protein S8P OS=Picrophilus torridus ... [more]
RS8_NITMS1.568e-2442.2830S ribosomal protein S8P OS=Nitrosopumilus mariti... [more]

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Properties
Property NameValue
Genbank descriptionC16 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213153 ID=GE213153; Name=GE213153; organism=Citrus sinensis; type=EST; length=465bp
ATTAGCGTGGTCGCGGCCGAGGTACTTTGCCACCAACATTCTTTCTCCTT
GCTTCTTCGTGATCCATGATACCAGCAGATGTTGTCAGGACAATATATCC
GAACTGTCTTGAAGGAAGCAATCTAGCCGTCCAGCCTTCAATCTCTTTCA
CACCAACATCGAAGCGAGGACTAATAACTCCACACTTGTTCAACCTTCCA
TTCAATTCAACCACAATCTTACCAGCTCTGTGGTCATCTACATACTCGAA
CTCACCAATGTAACCATGCTTCTGCATGACCAAAAGAAACTTGATAATCA
CTTTCGAGGATGGCCTGATCATGACCTGTCGCTTTCCTCTTTTCTCCGCA
TTATACATGCTCTTGAGAGCATCATTCAAGACACTAACTCGCACCATTCT
TCAAAATGAAGCTGAGCTCTACAACAGCGGCTGCGTTTTTGGGACCTCGG
CCGCGACCACGCTAA
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