GE213153
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_DESK1 (30S ribosomal protein S8P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps8p PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 1.675e-26 Identity = 58/126 (46.03%), Postives = 85/126 (67.46%), Query Frame = -3 Query: 29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEI---EGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397 MV + L +AL ++YNAE R K++V++ P+SK+ + L V+Q+ GYIGEFEY+DD R GKI ++L GR+NK GVI PR+ V +E+ W R LP+ G I+++T G++ H+EA K GG Sbjct: 1 MVVMDTLANALSAIYNAEIRAKKEVVVWPASKLTLNVLKVLQREGYIGEFEYIDDGRWGKIKIQLLGRINKIGVIKPRYPVKHRELAEFPEWLKRYLPAYNIGVIIVSTPYGVLSHKEAVEKQTGG 126
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_PYRAE (30S ribosomal protein S8P OS=Pyrobaculum aerophilum GN=rps8p PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 3.732e-26 Identity = 53/123 (43.09%), Postives = 84/123 (68.29%), Query Frame = -3 Query: 29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397 MV + +L++AL + NAE GK+Q +I P +K+ L V+Q++GY+GE EY+DD + GK +V+L G++N G I PR+ V +EI W + LP+RQ G ++++TS G+M H EA+ + +GG Sbjct: 1 MVMLDILSNALIQIKNAEIVGKKQAVIWPVNKLTYYTLRVLQRYGYVGEIEYIDDGKGGKYIVQLLGKINDIGPIRPRYPVKYREIVQWEQKFLPARQIGILIISTSQGVMSHIEAKERKIGG 123
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_THEAC (30S ribosomal protein S8P OS=Thermoplasma acidophilum GN=rps8p PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 6.366e-26 Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = -3 Query: 23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379 LND + S+ NA + GKR+++ P++K+I K L VMQ + YI FE +D+ R GK + LN +N CGVI PRF V + +E + AR LP+ FG ++LTT+ G+M + EAR+ +GGK+ Sbjct: 6 LNDVINSIKNASRLGKREIIAEPAAKLIGKVLKVMQDYNYIKSFEVIDESRGGKFKIVLNTTINNCGVIKPRFPVKNENLEKYEARYLPAEDFGILILTTTKGVMSNIEARKLGIGGKL 124
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METS3 (30S ribosomal protein S8P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps8p PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 6.366e-26 Identity = 57/119 (47.90%), Postives = 79/119 (66.39%), Query Frame = -3 Query: 23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379 L DAL ++ N E + K +I P+SK+I + L MQK YIG FEY+DD+RAG+ VEL G +NKCGVI PR V E E + R LP++ FG +++TT GIM H EA+ + +GG++ Sbjct: 7 LADALTNIRNNELQVKDSCVISPASKLIGEVLSTMQKENYIGNFEYIDDNRAGQFKVELEGNINKCGVIKPRHAVKKDEFEKFEKRYLPAKNFGILIVTTPEGIMTHYEAKERGIGGRL 125
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_HALLT (30S ribosomal protein S8P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps8p PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.086e-25 Identity = 53/117 (45.30%), Postives = 73/117 (62.39%), Query Frame = -3 Query: 23 DALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 373 +AL M NAE G + P+S +I L V+ GY+ FEYVDD +AGK VEL G +N+CG + PR+ G E E W R LP+R +G +++TTS G+M H EAR + +GG+V Sbjct: 9 NALAGMDNAESVGHLSYTVEPASNIIGSVLEVLYDRGYVDGFEYVDDGKAGKFEVELKGAINECGAVKPRYSAGADEFEKWEKRYLPARDYGTLIVTTSHGVMSHYEAREEGIGGQV 125
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_ARCFU (30S ribosomal protein S8P OS=Archaeoglobus fulgidus GN=rps8p PE=3 SV=2) HSP 1 Score: 115.546 bits (288), Expect = 1.086e-25 Identity = 53/120 (44.17%), Postives = 84/120 (70.00%), Query Frame = -3 Query: 29 VSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 388 V L++A+ ++ NAE G+++ I+P+SK+I L VM+ +GYI FEYV++HR GK +VEL+G +N CG I PRF V E E + R LP+R FG ++++T+ G+M ++AR++ +GG Sbjct: 3 VDTLSNAMIAIKNAEMVGEKKCEIKPASKLIGNVLKVMKDYGYIKGFEYVENHRGGKFIVELSGNINDCGAIRPRFSSSVTEYEMYEKRYLPARDFGILIVSTTKGVMSQKDARKQRLGG 122
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_THEVO (30S ribosomal protein S8P OS=Thermoplasma volcanium GN=rps8p PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.418e-25 Identity = 53/124 (42.74%), Postives = 82/124 (66.13%), Query Frame = -3 Query: 23 VRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 394 +R LND + S+ NA + G+R+++ P++K+I K L VMQ + YI FE +D+ R GK + LN +N CGVI PRF V + +E + +R LP+ FG ++LTT+ G+M + EAR+ +GGK+ Sbjct: 1 MRNDTLNDVINSIKNASRLGRREIIAEPAAKLIGKVLKVMQDYNYIKSFEVIDESRGGKFKIVLNTTINNCGVIKPRFPVKNENLEKYESRYLPAEDFGILILTTTKGVMSNIEARKLGIGGKL 124
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METTL (30S ribosomal protein S8P OS=Methanococcus thermolithotrophicus GN=rps8p PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 4.126e-25 Identity = 53/119 (44.54%), Postives = 81/119 (68.07%), Query Frame = -3 Query: 23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379 L +AL + N E GK ++P+SK+I + L VMQ HGYIG FEY++D RAG VEL G++NKCG + PR+ V +E E + R LP++ FG ++++T G+M H+EA+ + +GG++ Sbjct: 7 LANALNHISNCEGVGKSVAYVKPASKLIGRVLNVMQDHGYIGNFEYIEDGRAGIYKVELIGQINKCGAVKPRYAVKKQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKNQGLGGRL 125
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_PICTO (30S ribosomal protein S8P OS=Picrophilus torridus GN=rps8p PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 5.389e-25 Identity = 55/119 (46.22%), Postives = 79/119 (66.39%), Query Frame = -3 Query: 23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379 LND + ++ NA + GK +V+I P+S +I + L VMQ + YI FE +++ R GK VEL+ +N CGVI PR V IE + +R LP++ FG I+LTT+ GIM H EAR+ +GGK+ Sbjct: 6 LNDVINTIKNASRIGKSEVIIGPASVMIGRILKVMQDYNYIKSFEVIEEERGGKFRVELSDTINNCGVIKPRLSVKNSNIERYESRYLPAQDFGIIILTTTKGIMSHIEARKLGIGGKL 124
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_NITMS (30S ribosomal protein S8P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps8p PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 1.568e-24 Identity = 52/123 (42.28%), Postives = 77/123 (62.60%), Query Frame = -3 Query: 29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397 M ++L + ++YN E R K + I P+SK+ I+ L +QK GYIGEFE++DD R GK ++L ++ KCG ISPRF V E W + LP+ G +++TT+ G+M H EA +K +GG Sbjct: 1 MPATNILANLFVTLYNNETRRKGECTILPTSKLGIEVLKTLQKDGYIGEFEHIDDKRGGKFKIKLLAKITKCGAISPRFKVKTDEFNNWEQQYLPAYDRGMLLVTTNQGVMSHHEATQKGIGG 123 The following BLAST results are available for this feature:
BLAST of GE213153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 98
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Sequences
The
following sequences are available for this feature:
EST sequence >GE213153 ID=GE213153; Name=GE213153; organism=Citrus sinensis; type=EST; length=465bpback to top |