GE213153

Overview
NameGE213153
Unique NameGE213153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_HALWD (30S ribosomal protein S8P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps8p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.568e-24
Identity = 54/119 (45.38%), Postives = 74/119 (62.18%), Query Frame = -3
Query:   23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379
            L +AL  + NAE  G     I+P+S VI   L V    GYI  FE+VDD +AG+  VEL+G +N+CG + PR+  G  E E W  R LP+R +G +++TTS G+M H EAR   +GG+V
Sbjct:    7 LANALSGVDNAESVGHLSHEIQPASNVIGSVLEVFYDRGYINGFEFVDDGKAGRFEVELSGGINECGAVKPRYSAGADEFERWEKRYLPARDYGALIVTTSHGVMSHYEARETGIGGQV 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METVS (30S ribosomal protein S8P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps8p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.493e-24
Identity = 52/119 (43.70%), Postives = 79/119 (66.39%), Query Frame = -3
Query:   23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379
            L +AL  + N E  GK    ++P+SK+I + L VMQ  GYIG FEY++D +AG   V+L G++NKCG + PR+ V  +E E +  R LP++ FG ++++T  G+M H+EAR   VGG++
Sbjct:    7 LANALNHVSNCEGVGKNVAYLKPASKLIGRVLKVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKYQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARTAGVGGRL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METVA (30S ribosomal protein S8P OS=Methanococcus vannielii GN=rps8p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.493e-24
Identity = 52/119 (43.70%), Postives = 79/119 (66.39%), Query Frame = -3
Query:   23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379
            L +AL  + N E  GK    ++P+SK+I + L VMQ  GYIG FEY++D +AG   V+L G++NKCG + PR+ V  +E E +  R LP++ FG ++++T  G+M H+EAR   VGG++
Sbjct:    7 LANALNHVSNCEGVGKNVAYLKPASKLIGRVLKVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKYQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARTAGVGGRL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_NATPD (30S ribosomal protein S8P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps8p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.562e-24
Identity = 51/119 (42.86%), Postives = 73/119 (61.34%), Query Frame = -3
Query:   23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379
            L  AL  + NAE  G  +  I+P+S  I   L V    GY+  F++VDD +AG+  VEL G +N+CG + PR+  G  E E W  R LP+R +G +++TTS G+M H EAR + +GG+V
Sbjct:    7 LASALSGLDNAESVGHLEQTIQPASNEIGSVLEVFYDRGYVDGFQFVDDGKAGRFEVELKGAINECGAVKPRYSAGADEFEKWEKRFLPARDYGTLIVTTSHGVMSHYEAREQGIGGQV 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METHJ (30S ribosomal protein S8P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps8p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.562e-24
Identity = 47/125 (37.60%), Postives = 84/125 (67.20%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            M R++ + DA+ ++ NA   G+ + +++P+ ++I + L +M++ GYI E+  ++D R G+  V ++G +NKCG ISPR+ V + E+E W    LPS+  G ++++TS G+M H +ARR  VGG++
Sbjct:    1 MARLNTVADAMSTLKNASDTGRAECIVQPAGRLIGELLRIMKEAGYIKEYTRIEDGRGGQFKVVMSGLINKCGCISPRYSVSLDEMEYWEQLYLPSKNIGMLMISTSKGVMGHHDARRNGVGGEL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METST (30S ribosomal protein S8P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps8p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.958e-24
Identity = 55/119 (46.22%), Postives = 75/119 (63.03%), Query Frame = -3
Query:   23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379
            L DAL ++ N E +G    +I+P+SK+I   L  MQK  YIG FE VDD +AG   VEL G +NKCGVI PR  V   E E +  R LP++ FG +++TT  G+M H EA+   +GG++
Sbjct:    7 LADALTNIRNNELQGNDSCVIKPASKLIGHVLSTMQKENYIGNFELVDDGKAGIFNVELVGNINKCGVIKPRHAVKNTEFEDYEKRYLPAKNFGILIVTTPQGVMTHHEAKEAGIGGRL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METM7 (30S ribosomal protein S8P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps8p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.958e-24
Identity = 52/119 (43.70%), Postives = 78/119 (65.55%), Query Frame = -3
Query:   23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379
            L +AL  + N E  GK    ++P+SK+I + L VMQ  GYIG FEY++D +AG   V+L G++NKCG + PRF V   + E +  R LP++ FG ++++T  G+M H+EAR   VGG++
Sbjct:    7 LANALNHVSNCESVGKNVAYLKPASKLIGRVLNVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRFAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARNAGVGGRL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METVO (30S ribosomal protein S8P OS=Methanococcus voltae GN=rps8p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.782e-24
Identity = 51/119 (42.86%), Postives = 78/119 (65.55%), Query Frame = -3
Query:   23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379
            L +AL  + N E  GK    ++P+SK+I + L VMQ  GYIG FEY++D +AG   V L G++NKCG + PRF V  +E E +  R LP++ FG ++++T  G+M H+EA+   +GG++
Sbjct:    7 LANALNHISNCENVGKNTAYLKPASKLIGRVLKVMQDQGYIGNFEYIEDGKAGVYKVTLIGQINKCGAVKPRFAVKNQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKDSGIGGRL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METM6 (30S ribosomal protein S8P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps8p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.782e-24
Identity = 52/119 (43.70%), Postives = 78/119 (65.55%), Query Frame = -3
Query:   23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379
            L +AL  + N E  GK    ++P+SK+I + L VMQ  GYIG FEY++D +AG   V+L G++NKCG + PRF V   + E +  R LP++ FG ++++T  G+M H+EAR   VGG++
Sbjct:    7 LANALNHVSNCESVGKNVAYLKPASKLIGRVLNVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRFAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARSAGVGGRL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_HALSA (30S ribosomal protein S8P OS=Halobacterium salinarium GN=rps8p PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.016e-23
Identity = 53/119 (44.54%), Postives = 74/119 (62.18%), Query Frame = -3
Query:   23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379
            L+DAL  + NAE  G     + P+S ++   L V    GYI  FE+VD+ +AG+  VEL G +N+CG ++PR+ VG    E W  R LP+R +G +V+TTS GIM H EAR   +GG+V
Sbjct:    7 LSDALSGIDNAESVGHLTHTVAPASNMVGSVLEVFYDRGYIDGFEFVDNGKAGRFEVELKGAINECGPVNPRYSVGADGFEQWEKRYLPARDYGSLVVTTSHGIMSHYEAREAGIGGQV 125          
The following BLAST results are available for this feature:
BLAST of GE213153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_HALWD1.568e-2445.3830S ribosomal protein S8P OS=Haloquadratum walsbyi... [more]
RS8_METVS3.493e-2443.7030S ribosomal protein S8P OS=Methanococcus vanniel... [more]
RS8_METVA3.493e-2443.7030S ribosomal protein S8P OS=Methanococcus vanniel... [more]
RS8_NATPD4.562e-2442.8630S ribosomal protein S8P OS=Natronomonas pharaoni... [more]
RS8_METHJ4.562e-2437.6030S ribosomal protein S8P OS=Methanospirillum hung... [more]
RS8_METST5.958e-2446.2230S ribosomal protein S8P OS=Methanosphaera stadtm... [more]
RS8_METM75.958e-2443.7030S ribosomal protein S8P OS=Methanococcus maripal... [more]
RS8_METVO7.782e-2442.8630S ribosomal protein S8P OS=Methanococcus voltae ... [more]
RS8_METM67.782e-2443.7030S ribosomal protein S8P OS=Methanococcus maripal... [more]
RS8_HALSA1.016e-2344.5430S ribosomal protein S8P OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionC16 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213153 ID=GE213153; Name=GE213153; organism=Citrus sinensis; type=EST; length=465bp
ATTAGCGTGGTCGCGGCCGAGGTACTTTGCCACCAACATTCTTTCTCCTT
GCTTCTTCGTGATCCATGATACCAGCAGATGTTGTCAGGACAATATATCC
GAACTGTCTTGAAGGAAGCAATCTAGCCGTCCAGCCTTCAATCTCTTTCA
CACCAACATCGAAGCGAGGACTAATAACTCCACACTTGTTCAACCTTCCA
TTCAATTCAACCACAATCTTACCAGCTCTGTGGTCATCTACATACTCGAA
CTCACCAATGTAACCATGCTTCTGCATGACCAAAAGAAACTTGATAATCA
CTTTCGAGGATGGCCTGATCATGACCTGTCGCTTTCCTCTTTTCTCCGCA
TTATACATGCTCTTGAGAGCATCATTCAAGACACTAACTCGCACCATTCT
TCAAAATGAAGCTGAGCTCTACAACAGCGGCTGCGTTTTTGGGACCTCGG
CCGCGACCACGCTAA
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