GE213153
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_HALWD (30S ribosomal protein S8P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps8p PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 1.568e-24 Identity = 54/119 (45.38%), Postives = 74/119 (62.18%), Query Frame = -3 Query: 23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379 L +AL + NAE G I+P+S VI L V GYI FE+VDD +AG+ VEL+G +N+CG + PR+ G E E W R LP+R +G +++TTS G+M H EAR +GG+V Sbjct: 7 LANALSGVDNAESVGHLSHEIQPASNVIGSVLEVFYDRGYINGFEFVDDGKAGRFEVELSGGINECGAVKPRYSAGADEFERWEKRYLPARDYGALIVTTSHGVMSHYEARETGIGGQV 125
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METVS (30S ribosomal protein S8P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps8p PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 3.493e-24 Identity = 52/119 (43.70%), Postives = 79/119 (66.39%), Query Frame = -3 Query: 23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379 L +AL + N E GK ++P+SK+I + L VMQ GYIG FEY++D +AG V+L G++NKCG + PR+ V +E E + R LP++ FG ++++T G+M H+EAR VGG++ Sbjct: 7 LANALNHVSNCEGVGKNVAYLKPASKLIGRVLKVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKYQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARTAGVGGRL 125
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METVA (30S ribosomal protein S8P OS=Methanococcus vannielii GN=rps8p PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 3.493e-24 Identity = 52/119 (43.70%), Postives = 79/119 (66.39%), Query Frame = -3 Query: 23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379 L +AL + N E GK ++P+SK+I + L VMQ GYIG FEY++D +AG V+L G++NKCG + PR+ V +E E + R LP++ FG ++++T G+M H+EAR VGG++ Sbjct: 7 LANALNHVSNCEGVGKNVAYLKPASKLIGRVLKVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKYQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARTAGVGGRL 125
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_NATPD (30S ribosomal protein S8P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps8p PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 4.562e-24 Identity = 51/119 (42.86%), Postives = 73/119 (61.34%), Query Frame = -3 Query: 23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379 L AL + NAE G + I+P+S I L V GY+ F++VDD +AG+ VEL G +N+CG + PR+ G E E W R LP+R +G +++TTS G+M H EAR + +GG+V Sbjct: 7 LASALSGLDNAESVGHLEQTIQPASNEIGSVLEVFYDRGYVDGFQFVDDGKAGRFEVELKGAINECGAVKPRYSAGADEFEKWEKRFLPARDYGTLIVTTSHGVMSHYEAREQGIGGQV 125
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METHJ (30S ribosomal protein S8P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps8p PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 4.562e-24 Identity = 47/125 (37.60%), Postives = 84/125 (67.20%), Query Frame = -3 Query: 23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397 M R++ + DA+ ++ NA G+ + +++P+ ++I + L +M++ GYI E+ ++D R G+ V ++G +NKCG ISPR+ V + E+E W LPS+ G ++++TS G+M H +ARR VGG++ Sbjct: 1 MARLNTVADAMSTLKNASDTGRAECIVQPAGRLIGELLRIMKEAGYIKEYTRIEDGRGGQFKVVMSGLINKCGCISPRYSVSLDEMEYWEQLYLPSKNIGMLMISTSKGVMGHHDARRNGVGGEL 125
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METST (30S ribosomal protein S8P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps8p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 5.958e-24 Identity = 55/119 (46.22%), Postives = 75/119 (63.03%), Query Frame = -3 Query: 23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379 L DAL ++ N E +G +I+P+SK+I L MQK YIG FE VDD +AG VEL G +NKCGVI PR V E E + R LP++ FG +++TT G+M H EA+ +GG++ Sbjct: 7 LADALTNIRNNELQGNDSCVIKPASKLIGHVLSTMQKENYIGNFELVDDGKAGIFNVELVGNINKCGVIKPRHAVKNTEFEDYEKRYLPAKNFGILIVTTPQGVMTHHEAKEAGIGGRL 125
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METM7 (30S ribosomal protein S8P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps8p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 5.958e-24 Identity = 52/119 (43.70%), Postives = 78/119 (65.55%), Query Frame = -3 Query: 23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379 L +AL + N E GK ++P+SK+I + L VMQ GYIG FEY++D +AG V+L G++NKCG + PRF V + E + R LP++ FG ++++T G+M H+EAR VGG++ Sbjct: 7 LANALNHVSNCESVGKNVAYLKPASKLIGRVLNVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRFAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARNAGVGGRL 125
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METVO (30S ribosomal protein S8P OS=Methanococcus voltae GN=rps8p PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 7.782e-24 Identity = 51/119 (42.86%), Postives = 78/119 (65.55%), Query Frame = -3 Query: 23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379 L +AL + N E GK ++P+SK+I + L VMQ GYIG FEY++D +AG V L G++NKCG + PRF V +E E + R LP++ FG ++++T G+M H+EA+ +GG++ Sbjct: 7 LANALNHISNCENVGKNTAYLKPASKLIGRVLKVMQDQGYIGNFEYIEDGKAGVYKVTLIGQINKCGAVKPRFAVKNQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKDSGIGGRL 125
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METM6 (30S ribosomal protein S8P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps8p PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 7.782e-24 Identity = 52/119 (43.70%), Postives = 78/119 (65.55%), Query Frame = -3 Query: 23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379 L +AL + N E GK ++P+SK+I + L VMQ GYIG FEY++D +AG V+L G++NKCG + PRF V + E + R LP++ FG ++++T G+M H+EAR VGG++ Sbjct: 7 LANALNHVSNCESVGKNVAYLKPASKLIGRVLNVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRFAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARSAGVGGRL 125
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_HALSA (30S ribosomal protein S8P OS=Halobacterium salinarium GN=rps8p PE=3 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 1.016e-23 Identity = 53/119 (44.54%), Postives = 74/119 (62.18%), Query Frame = -3 Query: 23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379 L+DAL + NAE G + P+S ++ L V GYI FE+VD+ +AG+ VEL G +N+CG ++PR+ VG E W R LP+R +G +V+TTS GIM H EAR +GG+V Sbjct: 7 LSDALSGIDNAESVGHLTHTVAPASNMVGSVLEVFYDRGYIDGFEFVDNGKAGRFEVELKGAINECGPVNPRYSVGADGFEQWEKRYLPARDYGSLVVTTSHGIMSHYEAREAGIGGQV 125 The following BLAST results are available for this feature:
BLAST of GE213153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 98
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >GE213153 ID=GE213153; Name=GE213153; organism=Citrus sinensis; type=EST; length=465bpback to top |