GE213153

Overview
NameGE213153
Unique NameGE213153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_HALS3 (30S ribosomal protein S8P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.016e-23
Identity = 53/119 (44.54%), Postives = 74/119 (62.18%), Query Frame = -3
Query:   23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379
            L+DAL  + NAE  G     + P+S ++   L V    GYI  FE+VD+ +AG+  VEL G +N+CG ++PR+ VG    E W  R LP+R +G +V+TTS GIM H EAR   +GG+V
Sbjct:    7 LSDALSGIDNAESVGHLTHTVAPASNMVGSVLEVFYDRGYIDGFEFVDNGKAGRFEVELKGAINECGPVNPRYSVGADGFEQWEKRYLPARDYGSLVVTTSHGIMSHYEAREAGIGGQV 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_HALMA (30S ribosomal protein S8P OS=Haloarcula marismortui GN=rps8p PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 1.016e-23
Identity = 53/117 (45.30%), Postives = 72/117 (61.54%), Query Frame = -3
Query:   23 DALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 373
            +AL ++ NAE  G  +  + P+S  I   L V    GYI  F +VDD +AG+  VEL G +N+CG + PR+  G  E E W  R LP+R +G +V+TTS GIM H EAR + VGG+V
Sbjct:    9 NALSALNNAESVGHLEQTVSPASNEIGSVLEVFYDRGYIDGFSFVDDGKAGEFEVELKGAINECGPVKPRYSAGADEFEKWEKRFLPARDYGTLVVTTSHGIMSHYEAREQGVGGQV 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METMP (30S ribosomal protein S8P OS=Methanococcus maripaludis GN=rps8p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.327e-23
Identity = 51/119 (42.86%), Postives = 78/119 (65.55%), Query Frame = -3
Query:   23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379
            L +AL  + N E  GK    ++P+SK+I + L VMQ  GYIG FEY++D +AG   V+L G++NKCG + PR+ V   + E +  R LP++ FG ++++T  G+M H+EAR   VGG++
Sbjct:    7 LANALNHVSNCESVGKNVAYLKPASKLIGRVLNVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARNAGVGGRL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METM5 (30S ribosomal protein S8P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps8p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.327e-23
Identity = 51/119 (42.86%), Postives = 78/119 (65.55%), Query Frame = -3
Query:   23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379
            L +AL  + N E  GK    ++P+SK+I + L VMQ  GYIG FEY++D +AG   V+L G++NKCG + PR+ V   + E +  R LP++ FG ++++T  G+M H+EAR   VGG++
Sbjct:    7 LANALNHVSNCESVGKNVAYLKPASKLIGRVLNVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARNAGVGGRL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_AERPE (30S ribosomal protein S8P OS=Aeropyrum pernix GN=rps8p PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 2.264e-23
Identity = 56/128 (43.75%), Postives = 80/128 (62.50%), Query Frame = -3
Query:   23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARL---LPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397
            MV +  L +A+ ++ NAE RGK + +I PSSK+I   L +++K GYIG FEY+DD R GK  V+L GR+N  GV+ PR  V  +E+      L   L SR  G ++L+T  G+M H EA ++ +GG V
Sbjct:    1 MVMLDTLANAMAAIKNAEMRGKGEAIIMPSSKLIANVLRILEKEGYIGGFEYIDDGRWGKFRVKLLGRINDIGVVKPRTPVSYRELAKMPEHLRKYLASRDVGLLILSTPQGVMTHREALKRKIGGIV 128          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_META3 (30S ribosomal protein S8P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps8p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.044e-23
Identity = 49/119 (41.18%), Postives = 77/119 (64.71%), Query Frame = -3
Query:   23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379
            L +AL  + N E+ GK    ++P+SK+I +   VMQ  GY+G FEY++D +AG   VEL G +NKCG + PR+ V   E E +  R LP++ FG ++++T  G+M H+EA+   +GG++
Sbjct:    7 LANALNHLSNCERVGKDVAYVQPASKLIGRVFKVMQDKGYMGNFEYIEDGKAGIYKVELTGHINKCGAVRPRYAVKKTEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKSNGLGGRL 125          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_CENSY (30S ribosomal protein S8P OS=Cenarchaeum symbiosum GN=rps8p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.269e-22
Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = -3
Query:   29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397
            M   ++L +   ++YN E R +    + P+SK+ ++ L  ++K GYIGEFE+V+D R GK  V L  ++ KCG ISPRF V   E   W  + LPS   G +V+TT+ G+M H EA  + +GG
Sbjct:    1 MPATNILANLFVTLYNTEARRRGDCQVYPTSKLGVEVLGTLKKAGYIGEFEHVEDSRGGKFSVHLLAKITKCGAISPRFKVKKGEYTFWEQQYLPSYDRGMLVVTTNQGVMSHHEAAERGIGG 123          
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_NANEQ (30S ribosomal protein S8P OS=Nanoarchaeum equitans GN=rps8p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.681e-16
Identity = 40/118 (33.90%), Postives = 68/118 (57.63%), Query Frame = -3
Query:   29 VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 382
            ++ D L  + N  ++G+ +    P S +IIK + +M++ GYI  +  VD  R   I +EL+   N+   I PRF V   E+E +  R LP+  FG ++L+TS G++ + EA+ + +GG
Sbjct:    5 IVADFLSHLTNVRRKGEDKTAFFPVSNLIIKLVEIMKREGYIKNYRLVDSSRGKIIEIELSEYFNEANAIKPRFPVEYSELEKYEKRYLPALNFGRLILSTSKGLITNREAKEQKIGG 122          
The following BLAST results are available for this feature:
BLAST of GE213153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_HALS31.016e-2344.5430S ribosomal protein S8P OS=Halobacterium salinar... [more]
RS8_HALMA1.016e-2345.3030S ribosomal protein S8P OS=Haloarcula marismortu... [more]
RS8_METMP1.327e-2342.8630S ribosomal protein S8P OS=Methanococcus maripal... [more]
RS8_METM51.327e-2342.8630S ribosomal protein S8P OS=Methanococcus maripal... [more]
RS8_AERPE2.264e-2343.7530S ribosomal protein S8P OS=Aeropyrum pernix GN=r... [more]
RS8_META35.044e-2341.1830S ribosomal protein S8P OS=Methanococcus aeolicu... [more]
RS8_CENSY3.269e-2240.6530S ribosomal protein S8P OS=Cenarchaeum symbiosum... [more]
RS8_NANEQ2.681e-1633.9030S ribosomal protein S8P OS=Nanoarchaeum equitans... [more]

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Properties
Property NameValue
Genbank descriptionC16 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213153 ID=GE213153; Name=GE213153; organism=Citrus sinensis; type=EST; length=465bp
ATTAGCGTGGTCGCGGCCGAGGTACTTTGCCACCAACATTCTTTCTCCTT
GCTTCTTCGTGATCCATGATACCAGCAGATGTTGTCAGGACAATATATCC
GAACTGTCTTGAAGGAAGCAATCTAGCCGTCCAGCCTTCAATCTCTTTCA
CACCAACATCGAAGCGAGGACTAATAACTCCACACTTGTTCAACCTTCCA
TTCAATTCAACCACAATCTTACCAGCTCTGTGGTCATCTACATACTCGAA
CTCACCAATGTAACCATGCTTCTGCATGACCAAAAGAAACTTGATAATCA
CTTTCGAGGATGGCCTGATCATGACCTGTCGCTTTCCTCTTTTCTCCGCA
TTATACATGCTCTTGAGAGCATCATTCAAGACACTAACTCGCACCATTCT
TCAAAATGAAGCTGAGCTCTACAACAGCGGCTGCGTTTTTGGGACCTCGG
CCGCGACCACGCTAA
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