GE213153
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_HALS3 (30S ribosomal protein S8P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps8p PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.016e-23 Identity = 53/119 (44.54%), Postives = 74/119 (62.18%), Query Frame = -3 Query: 23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379 L+DAL + NAE G + P+S ++ L V GYI FE+VD+ +AG+ VEL G +N+CG ++PR+ VG E W R LP+R +G +V+TTS GIM H EAR +GG+V Sbjct: 7 LSDALSGIDNAESVGHLTHTVAPASNMVGSVLEVFYDRGYIDGFEFVDNGKAGRFEVELKGAINECGPVNPRYSVGADGFEQWEKRYLPARDYGSLVVTTSHGIMSHYEAREAGIGGQV 125
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_HALMA (30S ribosomal protein S8P OS=Haloarcula marismortui GN=rps8p PE=1 SV=3) HSP 1 Score: 108.997 bits (271), Expect = 1.016e-23 Identity = 53/117 (45.30%), Postives = 72/117 (61.54%), Query Frame = -3 Query: 23 DALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 373 +AL ++ NAE G + + P+S I L V GYI F +VDD +AG+ VEL G +N+CG + PR+ G E E W R LP+R +G +V+TTS GIM H EAR + VGG+V Sbjct: 9 NALSALNNAESVGHLEQTVSPASNEIGSVLEVFYDRGYIDGFSFVDDGKAGEFEVELKGAINECGPVKPRYSAGADEFEKWEKRFLPARDYGTLVVTTSHGIMSHYEAREQGVGGQV 125
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METMP (30S ribosomal protein S8P OS=Methanococcus maripaludis GN=rps8p PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.327e-23 Identity = 51/119 (42.86%), Postives = 78/119 (65.55%), Query Frame = -3 Query: 23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379 L +AL + N E GK ++P+SK+I + L VMQ GYIG FEY++D +AG V+L G++NKCG + PR+ V + E + R LP++ FG ++++T G+M H+EAR VGG++ Sbjct: 7 LANALNHVSNCESVGKNVAYLKPASKLIGRVLNVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARNAGVGGRL 125
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_METM5 (30S ribosomal protein S8P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps8p PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.327e-23 Identity = 51/119 (42.86%), Postives = 78/119 (65.55%), Query Frame = -3 Query: 23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379 L +AL + N E GK ++P+SK+I + L VMQ GYIG FEY++D +AG V+L G++NKCG + PR+ V + E + R LP++ FG ++++T G+M H+EAR VGG++ Sbjct: 7 LANALNHVSNCESVGKNVAYLKPASKLIGRVLNVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARNAGVGGRL 125
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_AERPE (30S ribosomal protein S8P OS=Aeropyrum pernix GN=rps8p PE=3 SV=2) HSP 1 Score: 107.842 bits (268), Expect = 2.264e-23 Identity = 56/128 (43.75%), Postives = 80/128 (62.50%), Query Frame = -3 Query: 23 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARL---LPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 397 MV + L +A+ ++ NAE RGK + +I PSSK+I L +++K GYIG FEY+DD R GK V+L GR+N GV+ PR V +E+ L L SR G ++L+T G+M H EA ++ +GG V Sbjct: 1 MVMLDTLANAMAAIKNAEMRGKGEAIIMPSSKLIANVLRILEKEGYIGGFEYIDDGRWGKFRVKLLGRINDIGVVKPRTPVSYRELAKMPEHLRKYLASRDVGLLILSTPQGVMTHREALKRKIGGIV 128
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_META3 (30S ribosomal protein S8P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps8p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 5.044e-23 Identity = 49/119 (41.18%), Postives = 77/119 (64.71%), Query Frame = -3 Query: 23 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 379 L +AL + N E+ GK ++P+SK+I + VMQ GY+G FEY++D +AG VEL G +NKCG + PR+ V E E + R LP++ FG ++++T G+M H+EA+ +GG++ Sbjct: 7 LANALNHLSNCERVGKDVAYVQPASKLIGRVFKVMQDKGYMGNFEYIEDGKAGIYKVELTGHINKCGAVRPRYAVKKTEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKSNGLGGRL 125
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_CENSY (30S ribosomal protein S8P OS=Cenarchaeum symbiosum GN=rps8p PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 3.269e-22 Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = -3 Query: 29 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 397 M ++L + ++YN E R + + P+SK+ ++ L ++K GYIGEFE+V+D R GK V L ++ KCG ISPRF V E W + LPS G +V+TT+ G+M H EA + +GG Sbjct: 1 MPATNILANLFVTLYNTEARRRGDCQVYPTSKLGVEVLGTLKKAGYIGEFEHVEDSRGGKFSVHLLAKITKCGAISPRFKVKKGEYTFWEQQYLPSYDRGMLVVTTNQGVMSHHEAAERGIGG 123
BLAST of GE213153 vs. ExPASy Swiss-Prot
Match: RS8_NANEQ (30S ribosomal protein S8P OS=Nanoarchaeum equitans GN=rps8p PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.681e-16 Identity = 40/118 (33.90%), Postives = 68/118 (57.63%), Query Frame = -3 Query: 29 VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 382 ++ D L + N ++G+ + P S +IIK + +M++ GYI + VD R I +EL+ N+ I PRF V E+E + R LP+ FG ++L+TS G++ + EA+ + +GG Sbjct: 5 IVADFLSHLTNVRRKGEDKTAFFPVSNLIIKLVEIMKREGYIKNYRLVDSSRGKIIEIELSEYFNEANAIKPRFPVEYSELEKYEKRYLPALNFGRLILSTSKGLITNREAKEQKIGG 122 The following BLAST results are available for this feature:
BLAST of GE213153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 98
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Sequences
The
following sequences are available for this feature:
EST sequence >GE213153 ID=GE213153; Name=GE213153; organism=Citrus sinensis; type=EST; length=465bpback to top |