GE213150

Overview
NameGE213150
Unique NameGE213150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length271
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3965 contig Csv1_Contig3965:1262..1532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME1_FICAW (Pectinesterase/pectinesterase inhibitor OS=Ficus awkeotsang PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.041e-20
Identity = 47/82 (57.32%), Postives = 57/82 (69.51%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTSAATT 267
            YSRTVVM+S ISDVI+PAGW EW  +FAL TLFY EY+N G G+ TS RVKW  + VITS   A+ +T A  I G +   +T
Sbjct:  454 YSRTVVMESYISDVIDPAGWLEWDRDFALKTLFYGEYRNGGPGSGTSERVKWPGYHVITSPEVAEQFTVAELIQGGSWLGST 535          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME22_SOLLC (Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2.2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.155e-19
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 1
Query:   19 RYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTSAATT 267
            +YSRTVVM+S +  +INPAGW EW G+FAL TL+Y E+ N G GA TS RVKW  +  IT  AEA  +T A  I G +   +T
Sbjct:  458 KYSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHCITDPAEAMPFTVAKLIQGGSWLRST 540          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME1_SOLLC (Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5)

HSP 1 Score: 94.7449 bits (234), Expect = 1.509e-19
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTSAATT 267
            YSRTVVM+S +  +INPAGW EW G+FAL TL+Y E+ N G GA TS RVKW  + VIT  A+A  +T A  I G +   +T
Sbjct:  455 YSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRST 536          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME_PRUPE (Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.971e-19
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGS 249
            YSRTV+MQS +S+VI P GW EW+G+FAL++LFY EY N G GA   +RVKW  ++V   + +A+ YT A FI G+
Sbjct:  431 YSRTVIMQSFLSNVIRPEGWLEWNGDFALNSLFYGEYMNYGPGAGLGSRVKWPGYQVFNESTQAKNYTVAQFIEGN 506          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME21_SOLLC (Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.971e-19
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 1
Query:   19 RYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTSAATT 267
            +YSRTVVM+S +  +I+P+GW EW G+FAL TL+Y E+ N G GA TS RVKW  + VIT  AEA ++T A  I G +   +T
Sbjct:  458 KYSRTVVMESYLGGLIDPSGWAEWHGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAEAMSFTVAKLIQGGSWLRST 540          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.574e-19
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTSAATT 267
            YSR V M SD+ D I+P GW EW+G FALD+L+Y EY N G G+    RVKW  + VITS  EA  +T A FI+GS+   +T
Sbjct:  496 YSRVVYMMSDMGDHIDPRGWLEWNGPFALDSLYYGEYMNKGLGSGIGQRVKWPGYHVITSTVEASKFTVAQFISGSSWLPST 577          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME20_ARATH (Probable pectinesterase/pectinesterase inhibitor 20 OS=Arabidopsis thaliana GN=PME20 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.489e-19
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAG 246
            YSRTVVMQ+ I   + P+GW  WSG+FAL TL+YAEY NTG G+DT+NRV W  + VI +A +A  +T  NF+ G
Sbjct:  470 YSRTVVMQTYIDGFLEPSGWNAWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHVI-NATDASNFTVTNFLVG 543          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME6_ARATH (Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.781e-19
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   10 RPGR-YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGS 249
            RP R +SRTV M+ ++  +++PAGW  WSG+FAL TL+Y EY NTGAGA  S RVKW  + VI +  EA+ +T  NF+ G+
Sbjct:  460 RPWRSHSRTVFMKCNLGALVSPAGWLPWSGSFALSTLYYGEYGNTGAGASVSGRVKWPGYHVIKTVTEAEKFTVENFLDGN 540          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME36_ARATH (Probable pectinesterase/pectinesterase inhibitor 36 OS=Arabidopsis thaliana GN=PME36 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.781e-19
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   19 RYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGST 252
            +YSRTV +++DI ++I+P GW EWSG++AL TL+Y E+ NTGAGA T  RV W  F V+    EA  +T + FI G +
Sbjct:  429 KYSRTVFLKTDIDELIDPRGWREWSGSYALSTLYYGEFMNTGAGAGTGRRVNWPGFHVLRGEEEASPFTVSRFIQGDS 506          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME41_ARATH (Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.179e-18
Identity = 41/75 (54.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAG 246
            YSRTV MQS I +V+ P GW EW+G+FAL TL+YAEY NTG+G+ T++RV W  + VI S  +A  +T  NF+ G
Sbjct:  483 YSRTVFMQSYIDEVVEPVGWREWNGDFALSTLYYAEYNNTGSGSSTTDRVVWPGYHVINS-TDANNFTVENFLLG 556          
The following BLAST results are available for this feature:
BLAST of GE213150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PME1_FICAW3.041e-2057.32Pectinesterase/pectinesterase inhibitor OS=Ficus a... [more]
PME22_SOLLC1.155e-1953.01Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2... [more]
PME1_SOLLC1.509e-1953.66Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9... [more]
PME_PRUPE1.971e-1953.95Pectinesterase/pectinesterase inhibitor PPE8B OS=P... [more]
PME21_SOLLC1.971e-1951.81Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2... [more]
PME61_ARATH2.574e-1952.44Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME20_ARATH7.489e-1956.00Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME6_ARATH9.781e-1951.85Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME36_ARATH9.781e-1950.00Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME41_ARATH2.179e-1854.67Probable pectinesterase/pectinesterase inhibitor 4... [more]

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Properties
Property NameValue
Genbank descriptionC13 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213150 ID=GE213150; Name=GE213150; organism=Citrus sinensis; type=EST; length=271bp
ATTTAGCGCCGCCCGGGCAGGTACTCGAGGACTGTTGTGATGCAATCTGA
TATAAGTGATGTTATTAACCCAGCTGGGTGGTATGAATGGAGTGGGAATT
TTGCATTGGACACATTGTTTTATGCAGAGTATCAAAACACAGGTGCTGGT
GCTGACACATCGAATAGGGTGAAATGGAGCACATTCAAGGTGATTACTAG
TGCAGCTGAGGCTCAAACTTATACAGCTGCGAATTTTATTGCAGGGAGTA
CCTCGGCCGCGACCACGCTAA
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