GE213150

Overview
NameGE213150
Unique NameGE213150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length271
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3965 contig Csv1_Contig3965:1262..1532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME16_ARATH (Probable pectinesterase/pectinesterase inhibitor 16 OS=Arabidopsis thaliana GN=PME16 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.040e-16
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGS 249
            YSRTVVMQS I   I+P+GW  WSG F L +LFY EY N+G G+  S RVKWS      +  EA+ +T A+FI G+
Sbjct:  427 YSRTVVMQSFIGGSIHPSGWSPWSGGFGLKSLFYGEYGNSGPGSSVSGRVKWSGCHPSLTVTEAEKFTVASFIDGN 502          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME58_ARATH (Probable pectinesterase/pectinesterase inhibitor 58 OS=Arabidopsis thaliana GN=PME58 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.664e-16
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGS 249
            +SRT++M + I DVI+PAGW  W+G+FAL+TL+YAEY+N G G++ + RVKW   K + S  +A  +T A F+ G+
Sbjct:  482 FSRTIIMGTTIDDVIDPAGWLPWNGDFALNTLYYAEYENNGPGSNQAQRVKWPGIKKL-SPKQALRFTPARFLRGN 556          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME35_ARATH (Probable pectinesterase/pectinesterase inhibitor 35 OS=Arabidopsis thaliana GN=PME35 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.664e-16
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   19 RYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTSAATT 267
            +YSRTVVMQS I   I+P+GW  WS NFAL TL+Y E+ N+G G+  S RV W+ +    +  EAQ +T + FI G++   +T
Sbjct:  438 QYSRTVVMQSFIDGSIHPSGWSPWSSNFALKTLYYGEFGNSGPGSSVSGRVSWAGYHPALTLTEAQGFTVSGFIDGNSWLPST 520          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME7_ARATH (Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.479e-16
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFI 240
            YSRTV MQS I   + P GW EW+G+FAL TL+YAEY NTG G++T+NRV W  + VI S   A       FI
Sbjct:  489 YSRTVYMQSYIDGFVEPVGWREWNGDFALSTLYYAEYNNTGPGSNTTNRVTWPGYHVINSTDAANFTVTGLFI 561          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME30_ARATH (Probable pectinesterase 30 OS=Arabidopsis thaliana GN=PME30 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.479e-16
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   19 RYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGST 252
            R+S   V+QS I D+++PAGW  W G   L TL Y EYQN G GA TS RVKWS FKV+    +A  +T A  + G T
Sbjct:  407 RFSTVAVLQSFIGDLVDPAGWTPWKGETGLSTLHYREYQNRGPGAVTSRRVKWSGFKVMKDPKKATEFTVAKLLDGET 484          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME42_ARATH (Probable pectinesterase/pectinesterase inhibitor 42 OS=Arabidopsis thaliana GN=PME42 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.544e-16
Identity = 41/82 (50.00%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   10 RPGR-YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGST 252
            RP R +S   V+QS I D+++PAGW  W G   L TL Y EYQN G GA TS RVKWS FKV+    +A  +T A  + G T
Sbjct:  430 RPWRIFSTVAVLQSFIGDLVDPAGWTPWEGETGLSTLHYREYQNRGPGAVTSRRVKWSGFKVMKDPKQATEFTVAKLLDGET 511          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.934e-16
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTSAATT 267
            +SRTV M S I   ++  GW EW+  FALDTL+Y EY N+G G+    RV W  ++VI S AEA  +T A FI GS+   +T
Sbjct:  507 FSRTVYMMSYIGGHVHTRGWLEWNTTFALDTLYYGEYLNSGPGSGLGQRVSWPGYRVINSTAEANRFTVAEFIYGSSWLPST 588          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME46_ARATH (Probable pectinesterase/pectinesterase inhibitor 46 OS=Arabidopsis thaliana GN=PME46 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.255e-15
Identity = 37/76 (48.68%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGS 249
            +S TV+M+S +   INP GW  W+G+ A DT+FYAEY N+G GA T NRVKW   K   +  EA  +T   FI G+
Sbjct:  475 FSTTVIMKSFMDKFINPKGWLPWTGDTAPDTIFYAEYLNSGPGASTKNRVKWQGLKTSLTKKEANKFTVKPFIDGN 550          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME59_ARATH (Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.945e-15
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 1
Query:   19 RYSRTVVMQSDISDVINPAGWYEW--SGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGS 249
            ++SRTVV+Q+ + +V++P GW  W     F LDTLFYAEY+NTG  + T  RV W  F V+  A++A  +T   FIAG+
Sbjct:  444 KFSRTVVLQTYLDNVVSPVGWSPWIEGSVFGLDTLFYAEYKNTGPASSTRWRVSWKGFHVLGRASDASAFTVGKFIAGT 522          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME43_ARATH (Putative pectinesterase/pectinesterase inhibitor 43 OS=Arabidopsis thaliana GN=PME43 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.846e-15
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGST 252
            +SRT++M ++I DVI+P GW +W+  FAL+TLFY EY+N G G+    RV+W   K I+  A A+ +   NF+ G+T
Sbjct:  614 FSRTIIMNTEIDDVIDPEGWLKWNETFALNTLFYTEYRNRGRGSGQGRRVRWRGIKRISDRA-AREFAPGNFLRGNT 689          
The following BLAST results are available for this feature:
BLAST of GE213150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PME16_ARATH2.040e-1652.63Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME58_ARATH2.664e-1648.68Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME35_ARATH2.664e-1646.99Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME7_ARATH3.479e-1653.42Probable pectinesterase/pectinesterase inhibitor 7... [more]
PME30_ARATH3.479e-1650.00Probable pectinesterase 30 OS=Arabidopsis thaliana... [more]
PME42_ARATH4.544e-1650.00Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME34_ARATH5.934e-1647.56Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME46_ARATH2.255e-1548.68Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME59_ARATH2.945e-1546.84Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME43_ARATH3.846e-1545.45Putative pectinesterase/pectinesterase inhibitor 4... [more]

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Properties
Property NameValue
Genbank descriptionC13 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213150 ID=GE213150; Name=GE213150; organism=Citrus sinensis; type=EST; length=271bp
ATTTAGCGCCGCCCGGGCAGGTACTCGAGGACTGTTGTGATGCAATCTGA
TATAAGTGATGTTATTAACCCAGCTGGGTGGTATGAATGGAGTGGGAATT
TTGCATTGGACACATTGTTTTATGCAGAGTATCAAAACACAGGTGCTGGT
GCTGACACATCGAATAGGGTGAAATGGAGCACATTCAAGGTGATTACTAG
TGCAGCTGAGGCTCAAACTTATACAGCTGCGAATTTTATTGCAGGGAGTA
CCTCGGCCGCGACCACGCTAA
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