GE213150

Overview
NameGE213150
Unique NameGE213150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length271
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3965 contig Csv1_Contig3965:1262..1532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.561e-15
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDT-LFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAG 246
            +S TV+MQSDI  ++NP GW  W  N    T +FYAEYQN+G GAD S RVKW+ +K   +   A+ +T  +FI G
Sbjct:  491 FSTTVIMQSDIGALLNPVGWMSWVPNVEPPTTIFYAEYQNSGPGADVSQRVKWAGYKPTITDRNAEEFTVQSFIQG 566          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME60_ARATH (Probable pectinesterase/pectinesterase inhibitor 60 OS=Arabidopsis thaliana GN=PME60 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.569e-15
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWS--GNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGS 249
            YSRTVV+++ I  V++P GW  W+    + LDTLFYAEY+N G  + T  RV+W  F V++ A++A  ++   FIAG+
Sbjct:  449 YSRTVVLKTYIDSVVSPVGWSPWTKGSTYGLDTLFYAEYKNIGPASSTRWRVRWKGFHVLSKASDASAFSVGKFIAGT 526          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME38_ARATH (Putative pectinesterase/pectinesterase inhibitor 38 OS=Arabidopsis thaliana GN=PME38 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.493e-14
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   10 RPGR-YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFI 240
            RP R Y+RTVV+ + +  +I P GW +W    AL TL+Y EYQN+G G+ T NRV W+ F VI+   EA+ +T   FI
Sbjct:  380 RPWRSYARTVVIGTYLDTLIEPNGWIDWDNVTALSTLYYGEYQNSGPGSGTENRVDWAGFHVISDIQEAREFTLPKFI 457          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME22_ARATH (Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.493e-14
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAG 246
            YSRTV M + +S ++ P GW EW GNFALDTL+Y EY N G G  +S RVKW  + ++     A ++T  +FI G
Sbjct:  453 YSRTVYMNTYMSQLVQPRGWLEWFGNFALDTLWYGEYNNIGPGWRSSGRVKWPGYHIMDKRT-ALSFTVGSFIDG 526          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.554e-14
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALD--TLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAG 246
            +S+TV+MQS I   +NPAGW  W+  +     T+FY EY+N+G G+D S RVKW+ +K I+S  EA  +T   F+ G
Sbjct:  877 FSKTVIMQSVIGSFVNPAGWIAWNSTYDPPPRTIFYREYKNSGPGSDLSKRVKWAGYKPISSDDEAARFTVKYFLRG 953          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME12_ARATH (Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.554e-14
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   10 RPGR-YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAG 246
            RP R +SRTVVM+S I + I+ +GW +W+G  ALDTL+Y EY N G G++T  RV W  F ++    +A  +TA  FI G
Sbjct:  454 RPWREFSRTVVMESYIDEFIDGSGWSKWNGGEALDTLYYGEYNNNGPGSETVKRVNWPGFHIM-GYEDAFNFTATEFITG 532          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME45_ARATH (Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.254e-14
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSG-NFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAG 246
            +SRTVVM+S I DVI+P GW  W   +FA+DTL YAEY+N G    T+ RVKW  F+V+ +  EA  +T   F+ G
Sbjct:  518 HSRTVVMESTIEDVIDPVGWLRWQETDFAIDTLSYAEYKNDGPSGATAARVKWPGFRVL-NKEEAMKFTVGPFLQG 592          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME33_ARATH (Probable pectinesterase/pectinesterase inhibitor 33 OS=Arabidopsis thaliana GN=PME33 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.254e-14
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEW--SGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGST 252
            YSR  +M++ I + I+P GW  W    NFAL+T+FY EY+N G G+ T  RV+W  F  ITS A A  +T  + IAG +
Sbjct:  503 YSRVTIMKTYIDNSISPLGWSPWLRGSNFALNTVFYGEYKNFGPGSSTRWRVRWKGFHAITSTAVASRFTVGSLIAGGS 581          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME21_ARATH (Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.616e-13
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAG 246
            YSRT++M + I D + P GW  W G+F L TLFY+E QNTG G+  +NRV W+  K + S  +   +T A +I G
Sbjct:  477 YSRTIIMNTFIPDFVQPQGWQPWLGDFGLKTLFYSEVQNTGPGSALANRVTWAGIKTL-SEEDILKFTPAQYIQG 550          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME64_ARATH (Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.702e-13
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTSAATT 267
            +SRTV +  ++  +I+P GW  W+G+FAL TL+Y EY+NTG G+  S+RV WS+            Y+ ANFI     A+TT
Sbjct:  523 FSRTVFVNCNLESLISPDGWMPWNGDFALKTLYYGEYKNTGPGSVRSSRVPWSS---EIPEKHVDVYSVANFIQADEWASTT 601          
The following BLAST results are available for this feature:
BLAST of GE213150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PME3_PHAVU6.561e-1548.68Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME60_ARATH8.569e-1544.87Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME38_ARATH2.493e-1447.44Putative pectinesterase/pectinesterase inhibitor 3... [more]
PME22_ARATH2.493e-1448.00Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME26_ARATH5.554e-1445.45Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME12_ARATH5.554e-1447.50Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME45_ARATH7.254e-1450.00Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME33_ARATH7.254e-1445.57Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME21_ARATH1.616e-1345.33Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME64_ARATH4.702e-1342.68Probable pectinesterase/pectinesterase inhibitor 6... [more]

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Properties
Property NameValue
Genbank descriptionC13 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213150 ID=GE213150; Name=GE213150; organism=Citrus sinensis; type=EST; length=271bp
ATTTAGCGCCGCCCGGGCAGGTACTCGAGGACTGTTGTGATGCAATCTGA
TATAAGTGATGTTATTAACCCAGCTGGGTGGTATGAATGGAGTGGGAATT
TTGCATTGGACACATTGTTTTATGCAGAGTATCAAAACACAGGTGCTGGT
GCTGACACATCGAATAGGGTGAAATGGAGCACATTCAAGGTGATTACTAG
TGCAGCTGAGGCTCAAACTTATACAGCTGCGAATTTTATTGCAGGGAGTA
CCTCGGCCGCGACCACGCTAA
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