GE213150

Overview
NameGE213150
Unique NameGE213150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length271
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3965 contig Csv1_Contig3965:1262..1532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME24_ARATH (Putative pectinesterase/pectinesterase inhibitor 24 OS=Arabidopsis thaliana GN=PME24 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.702e-13
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAG 246
            +S TV+M S +   I+  GW  W+G+ A DT+FY EY+NTG GA T NRVKW   + + S  EA  +T   FI G
Sbjct:  473 FSTTVIMDSYLHGFIDRKGWLPWTGDSAPDTIFYGEYKNTGPGASTKNRVKWKGLRFL-STKEANRFTVKPFIDG 546          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME28_ARATH (Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.020e-13
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAG 246
            YSRT++M + I D + P GW  W G F L+TLFY+E QNTG GA  + RV W   K + S  E   +T A +I G
Sbjct:  474 YSRTIIMNTFIPDFVPPEGWQPWLGEFGLNTLFYSEVQNTGPGAAITKRVTWPGIKKL-SDEEILKFTPAQYIQG 547          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME51_ARATH (Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.199e-12
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFI 240
            YSRTV +  ++  +I P GW  WSG+FAL TL+Y E +NTG G+D S RV WS+            Y+ ANFI
Sbjct:  472 YSRTVFIGCNLEALITPDGWLPWSGDFALKTLYYGESKNTGPGSDRSQRVSWSS---QIPDEHVHVYSVANFI 541          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME1_ARATH (Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.199e-12
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEW-SGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGS 249
            +S TV+M++ I  V+ P+GW  W SG     ++ Y EY+NTG G+D + RVKW+ +K + S AEA  +T A  + G+
Sbjct:  497 FSTTVIMETVIGAVVRPSGWMSWVSGVDPPASIVYGEYKNTGPGSDVTQRVKWAGYKPVMSDAEAAKFTVATLLHGA 573          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME_PETIN (Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.867e-12
Identity = 34/74 (45.95%), Postives = 43/74 (58.11%), Query Frame = 1
Query:   22 YSRTVVMQSDISDVINPAGWYEWS-GNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFI 240
            YSRT++MQS I   I P GW  W+  NF  DT +YAEYQN G GA    R+ W  F+   +   AQ +TA  +I
Sbjct:  280 YSRTIIMQSYIDKFIEPEGWAPWNITNFGRDTSYYAEYQNRGPGAALDKRITWKGFQKGFTGEAAQKFTAGVYI 353          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME37_ARATH (Probable pectinesterase/pectinesterase inhibitor VGDH2 OS=Arabidopsis thaliana GN=VGDH2 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.580e-11
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 1
Query:   19 RYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFI 240
            +++ TV++ ++I D+I P GW EW G     T  Y E+ N G GA T+ R  W   KV  SAAE +TYT AN++
Sbjct:  500 KFATTVIIGTEIGDLIKPEGWTEWQGEQNHKTAKYIEFNNRGPGAATTQRPPW--VKVAKSAAEVETYTVANWV 571          
BLAST of GE213150 vs. ExPASy Swiss-Prot
Match: PME5_ARATH (Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.748e-11
Identity = 32/74 (43.24%), Postives = 43/74 (58.11%), Query Frame = 1
Query:   19 RYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFI 240
            ++S TV++ S+I DVI P GW  W G     +  Y EY N G GA T+ RV W   K+  SAAE   +T AN++
Sbjct:  507 KFSTTVIINSEIGDVIRPEGWKIWDGESFHKSCRYVEYNNRGPGAITNRRVNW--VKIARSAAEVNDFTVANWL 578          
The following BLAST results are available for this feature:
BLAST of GE213150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PME24_ARATH4.702e-1346.67Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME28_ARATH8.020e-1346.67Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME51_ARATH5.199e-1246.58Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME1_ARATH5.199e-1241.56Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 P... [more]
PME_PETIN8.867e-1245.95Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=... [more]
PME37_ARATH2.580e-1143.24Probable pectinesterase/pectinesterase inhibitor V... [more]
PME5_ARATH5.748e-1143.24Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 P... [more]

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Properties
Property NameValue
Genbank descriptionC13 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213150 ID=GE213150; Name=GE213150; organism=Citrus sinensis; type=EST; length=271bp
ATTTAGCGCCGCCCGGGCAGGTACTCGAGGACTGTTGTGATGCAATCTGA
TATAAGTGATGTTATTAACCCAGCTGGGTGGTATGAATGGAGTGGGAATT
TTGCATTGGACACATTGTTTTATGCAGAGTATCAAAACACAGGTGCTGGT
GCTGACACATCGAATAGGGTGAAATGGAGCACATTCAAGGTGATTACTAG
TGCAGCTGAGGCTCAAACTTATACAGCTGCGAATTTTATTGCAGGGAGTA
CCTCGGCCGCGACCACGCTAA
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