GE213149

Overview
NameGE213149
Unique NameGE213149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length331
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11531 contig Csv1_Contig11531:22..352. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213149 vs. ExPASy Swiss-Prot
Match: RS9_DROME (40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.487e-24
Identity = 50/75 (66.67%), Postives = 65/75 (86.67%), Query Frame = -3
Query:   27 YGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHR 251
            + KT+  PRRPYEK RLD EL+++GEYGLR KRE+WRV+YAL++IR AAR+LLTLDEK+ +R+F+G ALLRR+ R
Sbjct:   10 FSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDEKRLFQGNALLRRLVR 84          
BLAST of GE213149 vs. ExPASy Swiss-Prot
Match: RS9_TRYBB (Probable 40S ribosomal protein S9 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.325e-23
Identity = 47/79 (59.49%), Postives = 61/79 (77.22%), Query Frame = -3
Query:   24 YRNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRY 260
            Y N+ + +K PRRP+EKERLD E++L G+YGLRCKRE+WRV   LS++R  AR LLTL E +PRR+ EG A++RR H Y
Sbjct:    4 YNNFNRVWKAPRRPFEKERLDREMKLCGQYGLRCKREIWRVNMTLSKMRRTARLLLTLPENHPRRLLEGSAIMRRCHGY 82          
BLAST of GE213149 vs. ExPASy Swiss-Prot
Match: RS9B_SCHPO (40S ribosomal protein S9-B OS=Schizosaccharomyces pombe GN=rps9b PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 1.730e-23
Identity = 50/77 (64.94%), Postives = 62/77 (80.52%), Query Frame = -3
Query:   27 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHR 257
            R   KT+K PRRP+E  RLDAEL+L GEYGLR K E+WRV   LS+IR AAR+LLTLDEK+P+R+FEG A++RR+ R
Sbjct:    6 RKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVR 82          
BLAST of GE213149 vs. ExPASy Swiss-Prot
Match: RS9A_SCHPO (40S ribosomal protein S9-A OS=Schizosaccharomyces pombe GN=rps9a PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.730e-23
Identity = 50/77 (64.94%), Postives = 62/77 (80.52%), Query Frame = -3
Query:   27 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHR 257
            R   KT+K PRRP+E  RLDAEL+L GEYGLR K E+WRV   LS+IR AAR+LLTLDEK+P+R+FEG A++RR+ R
Sbjct:    6 RKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVR 82          
BLAST of GE213149 vs. ExPASy Swiss-Prot
Match: RS9B_YEAST (40S ribosomal protein S9-B OS=Saccharomyces cerevisiae GN=RPS9B PE=1 SV=4)

HSP 1 Score: 107.071 bits (266), Expect = 2.952e-23
Identity = 48/77 (62.34%), Postives = 63/77 (81.82%), Query Frame = -3
Query:   27 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHR 257
            R Y KT+  P+RPYE  RLDAEL+L GE+GL+ KRE++R+ + LS+IR AARDLLT DEK+P+R+FEG AL+RR+ R
Sbjct:    6 RTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVR 82          
BLAST of GE213149 vs. ExPASy Swiss-Prot
Match: RS9A_YEAST (40S ribosomal protein S9-A OS=Saccharomyces cerevisiae GN=RPS9A PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 6.576e-23
Identity = 47/77 (61.04%), Postives = 63/77 (81.82%), Query Frame = -3
Query:   27 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHR 257
            R Y KT+  P+RPYE  RLDAEL+L GE+GL+ K+E++R+ + LS+IR AARDLLT DEK+P+R+FEG AL+RR+ R
Sbjct:    6 RTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVR 82          
BLAST of GE213149 vs. ExPASy Swiss-Prot
Match: RS9_CAEEL (40S ribosomal protein S9 OS=Caenorhabditis elegans GN=rps-9 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.263e-22
Identity = 45/71 (63.38%), Postives = 62/71 (87.32%), Query Frame = -3
Query:   33 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRM 245
            K  K PRRP+EKERLD EL+L+G +GL+ KRE+WRV+Y L+++R AAR+LLTL++K+P+R+FEG ALLRR+
Sbjct:   10 KVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDKDPKRLFEGNALLRRL 80          
BLAST of GE213149 vs. ExPASy Swiss-Prot
Match: RS9_NAEFO (40S ribosomal protein S9 OS=Naegleria fowleri GN=RPS9 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.516e-19
Identity = 47/84 (55.95%), Postives = 60/84 (71.43%), Query Frame = -3
Query:   27 MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHR 278
            MV    YR + K    PRRP+EKER+D EL++ G+YGL+ K+E+WR+QY L+R R  AR LLTL E + +R FEG ALLRRM R
Sbjct:    1 MVQNRCYRVHSKVSLPPRRPFEKERMDRELKMCGKYGLKNKQEIWRLQYYLARARKTARHLLTLPEDDMKRQFEGAALLRRMTR 84          
BLAST of GE213149 vs. ExPASy Swiss-Prot
Match: RS9_ENTHI (40S ribosomal protein S9 OS=Entamoeba histolytica GN=2.t00127 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.318e-18
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = -3
Query:   30 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMH 257
            RN+  T+K P+ PYE+ER DAEL+LVG++GL+ K+E+ RV Y L  +R  A+ +L  D K+P+R+ EG ALLRR+H
Sbjct:    6 RNHSITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPKRLLEGAALLRRLH 81          
The following BLAST results are available for this feature:
BLAST of GE213149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS9_DROME3.487e-2466.6740S ribosomal protein S9 OS=Drosophila melanogaste... [more]
RS9_TRYBB1.325e-2359.49Probable 40S ribosomal protein S9 OS=Trypanosoma b... [more]
RS9B_SCHPO1.730e-2364.9440S ribosomal protein S9-B OS=Schizosaccharomyces ... [more]
RS9A_SCHPO1.730e-2364.9440S ribosomal protein S9-A OS=Schizosaccharomyces ... [more]
RS9B_YEAST2.952e-2362.3440S ribosomal protein S9-B OS=Saccharomyces cerevi... [more]
RS9A_YEAST6.576e-2361.0440S ribosomal protein S9-A OS=Saccharomyces cerevi... [more]
RS9_CAEEL3.263e-2263.3840S ribosomal protein S9 OS=Caenorhabditis elegans... [more]
RS9_NAEFO1.516e-1955.9540S ribosomal protein S9 OS=Naegleria fowleri GN=R... [more]
RS9_ENTHI8.318e-1852.6340S ribosomal protein S9 OS=Entamoeba histolytica ... [more]

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Properties
Property NameValue
Genbank descriptionC12 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213149 ID=GE213149; Name=GE213149; organism=Citrus sinensis; type=EST; length=331bp
ATTTCGAGGGGCCGCCCGGACAGGTACCTGTGCATCCTCCTGAGAAGAGC
CTCACCCTCGAAAATACGACGTGGGTTCTTCTCATCGAGAGTGAGAAGAT
CCCTCGCAGCATTTCGGATGCGGCTCAGTGCATATTGAACCCTCCAGAGT
TCCCTCTTGCAACGAAGCCCATACTCTCCCACAAGTCTCAACTCAGCATC
CAATCGCTCCTTCTCATAGGGACGTCTTGGCTTCTTGAAGGTTTTCCCAT
AGTTGCGGTAGAATGAAACGTGCACCATCTTTGCGCGCCGCTGGTGCTAC
CCTCACTCACCTGCCCGGGCGGCCGCTCGAA
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