GE213148

Overview
NameGE213148
Unique NameGE213148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7065 contig Csv1_Contig7065:1..391. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213148 vs. ExPASy Swiss-Prot
Match: RS24_SPOFR (40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.705e-29
Identity = 61/91 (67.03%), Postives = 75/91 (82.42%), Query Frame = -1
Query:   24 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSARKFEPKY 296
            M +   TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY V  P+ +FVF F+T+FGGGKSTGF LIYD++D A+KFEPK+
Sbjct:    1 MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKH 90          
BLAST of GE213148 vs. ExPASy Swiss-Prot
Match: RS24_MACFA (40S ribosomal protein S24 OS=Macaca fascicularis GN=RPS24 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.614e-29
Identity = 62/86 (72.09%), Postives = 72/86 (83.72%), Query Frame = -1
Query:   24 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSARKFEPKY 281
            VTIRTRKFMTNRLL RKQ VI VLHPG+A V K E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D A+K EPK+
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIGVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKH 89          
BLAST of GE213148 vs. ExPASy Swiss-Prot
Match: RS24B_SCHPO (40S ribosomal protein S24-B OS=Schizosaccharomyces pombe GN=rps24b PE=2 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 2.290e-28
Identity = 59/88 (67.05%), Postives = 71/88 (80.68%), Query Frame = -1
Query:   24 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSARKFEPKY 287
            +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK E++EKLA+MY   D   +  F  RTHFGGG+STGF LIYDS +S +KFEP Y
Sbjct:    3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKT-DSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEPHY 89          
BLAST of GE213148 vs. ExPASy Swiss-Prot
Match: RS24_RHIRA (40S ribosomal protein S24 OS=Rhizomucor racemosus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.662e-28
Identity = 58/90 (64.44%), Postives = 72/90 (80.00%), Query Frame = -1
Query:   24 ADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSARKFEPKY 293
            AD AVTIRTRKF+TNRLL RKQ V+DV+HPG ANVSK EL+ K+ +MY   D   + VF F+THFGGGK+TGF LIYD+V++ + FEPK+
Sbjct:   20 ADAAVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKA-DKEVVSVFGFKTHFGGGKTTGFALIYDNVEALKNFEPKH 108          
BLAST of GE213148 vs. ExPASy Swiss-Prot
Match: RS24_ORYLA (40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.662e-28
Identity = 58/86 (67.44%), Postives = 71/86 (82.56%), Query Frame = -1
Query:   24 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSARKFEPKY 281
            VTIRTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY    P+ +FVF FRT FGGGK+TGF ++YDS+D A+K EPK+
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKH 89          
BLAST of GE213148 vs. ExPASy Swiss-Prot
Match: RS24_ICTPU (40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.662e-28
Identity = 57/87 (65.52%), Postives = 72/87 (82.76%), Query Frame = -1
Query:   24 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSARKFEPKY 284
            +VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY    P+ +FVF F+T FGGGK+TGF ++YDS+D A+K EPKY
Sbjct:    4 SVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVFGFKTQFGGGKTTGFAMVYDSLDYAKKNEPKY 89          
BLAST of GE213148 vs. ExPASy Swiss-Prot
Match: RS24_TAKRU (40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.701e-28
Identity = 57/86 (66.28%), Postives = 71/86 (82.56%), Query Frame = -1
Query:   24 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSARKFEPKY 281
            VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY    P+ +FVF FRT FGGGK+TGF ++YDS+D A+K EPK+
Sbjct:    5 VTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKH 89          
BLAST of GE213148 vs. ExPASy Swiss-Prot
Match: RS24A_SCHPO (40S ribosomal protein S24-A OS=Schizosaccharomyces pombe GN=rps24a PE=2 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 2.532e-27
Identity = 55/88 (62.50%), Postives = 72/88 (81.82%), Query Frame = -1
Query:   24 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSARKFEPKY 287
            +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK +L+EKL +MY   D +++  F  RTH+GGG++TGF LIYD V++ +KFEP Y
Sbjct:    3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKT-DASAVQAFGLRTHYGGGRTTGFALIYDDVEAMKKFEPHY 89          
BLAST of GE213148 vs. ExPASy Swiss-Prot
Match: RS24_YEAST (40S ribosomal protein S24 OS=Saccharomyces cerevisiae GN=RPS24A PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 2.143e-26
Identity = 58/87 (66.67%), Postives = 71/87 (81.61%), Query Frame = -1
Query:   24 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSARKFEPKY 284
            AVTIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y   + +++ VF FRT FGGGKS GFGL+Y+SV  A+KFEP Y
Sbjct:    4 AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRTQFGGGKSVGFGLVYNSVAEAKKFEPTY 89          
The following BLAST results are available for this feature:
BLAST of GE213148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS24_SPOFR2.705e-2967.0340S ribosomal protein S24 OS=Spodoptera frugiperda... [more]
RS24_MACFA4.614e-2972.0940S ribosomal protein S24 OS=Macaca fascicularis G... [more]
RS24B_SCHPO2.290e-2867.0540S ribosomal protein S24-B OS=Schizosaccharomyces... [more]
RS24_RHIRA6.662e-2864.4440S ribosomal protein S24 OS=Rhizomucor racemosus ... [more]
RS24_ORYLA6.662e-2867.4440S ribosomal protein S24 OS=Oryzias latipes GN=rp... [more]
RS24_ICTPU6.662e-2865.5240S ribosomal protein S24 OS=Ictalurus punctatus G... [more]
RS24_TAKRU8.701e-2866.2840S ribosomal protein S24 OS=Takifugu rubripes GN=... [more]
RS24A_SCHPO2.532e-2762.5040S ribosomal protein S24-A OS=Schizosaccharomyces... [more]
RS24_YEAST2.143e-2666.6740S ribosomal protein S24 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC11 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213148 ID=GE213148; Name=GE213148; organism=Citrus sinensis; type=EST; length=398bp
ATTTCGAGCGGCCGCCCGGGCAGGTACTTGGGCTCAAACTTCCTAGCACT
GTCAACTGAATCATAGATCAGACCAAAGCCGGTAGATTTCCCACCTCCAA
AGTGAGTTCGAAACTTAAAAACAAAGATTGAGTTGGGGTCCTTCACATCA
TACATCCTCGCCAACTTCTCCTTCAACTCAGCCTTGGAAACATTGGCCCT
GCCAGGATGAAGAACATCAATAACGAATTGCTTCCTGGAAAGGAGACGGT
TGGTCATGAACTTCCTAGTTCGAATGGTGACAGCCTTGTCCGCCATTGTT
GGTTGGTTAAAAGTCTGCTGAATCCTCGACAAAGATATAGCACGAGAGGC
GCGACTAGGCAATGAAGCGAGTTAACACCTCGGCCGCGACCACGCTAA
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