GE213142

Overview
NameGE213142
Unique NameGE213142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GE213142_ssr23 microsatellite GE213142_ssr23:23..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4376 contig Csv1_Contig4376:151..937. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213142 vs. ExPASy Swiss-Prot
Match: TCTP_DROPS (Translationally-controlled tumor protein homolog OS=Drosophila pseudoobscura pseudoobscura GN=Tctp PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.468e-17
Identity = 57/175 (32.57%), Postives = 97/175 (55.43%), Query Frame = 3
Query:   96 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAF-DKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKE--GATDPTFLYIADALKEVKC 599
            M +++D++TGDE+ +D++  K  ++ +++EV GK + +   ++ + GAN S                 VD+V   RL E  AF DKK +  Y+K ++K +  KL+E   ++ ++FK N+  A K +L +  +LQFF GESM  DG +    Y+E  G + P  ++    L+E KC
Sbjct:    1 MKIFKDIITGDEMFADTYKIKLVDD-VVYEVYGKLISREGSEIKLEGANASAEEADEGTDTNVESG--VDVVLNHRLVECFAFGDKKSYTLYLKDYMKKVLAKLAEKSPDQVDVFKTNMNKAMKDILGRFKELQFFTGESMDCDGMVALVEYREIDGQSIPVLMFFKHGLEEEKC 172          
BLAST of GE213142 vs. ExPASy Swiss-Prot
Match: TCTP_CHICK (Translationally-controlled tumor protein homolog OS=Gallus gallus GN=TPT1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.917e-17
Identity = 56/174 (32.18%), Postives = 88/174 (50.57%), Query Frame = 3
Query:   96 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVD---IGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT---KFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 599
            M++Y+D ++ DE+ SD +  +E  NG+  EVEGK V +    +D   IG N S                V DIV    LQE  +F K+ +  Y+K ++K +  +L E + E  K  + GA    K +L+   + QFFVGE+M+ DG +    ++E    P  ++  D L+  KC
Sbjct:    1 MIIYRDCISQDEMFSDIYKIREVANGLCLEVEGKMVTRTEGQIDDSLIGGNASAEGPEGEGTEATVITGV-DIVINHHLQET-SFTKESYKKYIKDYMKAIKARLEEHKPERVKPFMTGAAEQIKHILANFKNYQFFVGENMNPDGMVALLDFREDGVTPYMIFFKDGLEIEKC 172          
BLAST of GE213142 vs. ExPASy Swiss-Prot
Match: TCTP_THEAN (Translationally-controlled tumor protein homolog OS=Theileria annulata GN=TCTP PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.243e-16
Identity = 57/173 (32.95%), Postives = 88/173 (50.87%), Query Frame = 3
Query:   96 MLVYQDLLTGDELLSDSF----PYKETE-NGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKE 590
            M VY+DL + DE+ SD++    P+   + + + +EV+   V +G  D  IG N                  VVD+VD F LQ  P   KK + +Y+K++I+ L   L E   ER E FK ++    K +L+   D +F+VGES+  +  LV+ YYK     P  +++ D L E
Sbjct:    1 MKVYRDLYSNDEVCSDAYDHLDPFDNPDLSSVAFEVKTSKVAKGEEDYGIGYNDEEGGDQMNVDPNVEV--VVDVVDKFALQSLP-LTKKDYSSYIKKYIQRLVATLQEKNPERVEPFKTSVSEFVKHVLANFDDFEFYVGESLDYEAGLVYGYYKGEEVSPRLVFLKDGLVE 170          
BLAST of GE213142 vs. ExPASy Swiss-Prot
Match: TCTP_PLACH (Translationally-controlled tumor protein homolog OS=Plasmodium chabaudi GN=TCTP PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.623e-16
Identity = 57/175 (32.57%), Postives = 90/175 (51.43%), Query Frame = 3
Query:   96 MLVYQDLLTGDELLSDSF----PYKETE-NGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 596
            M VY+D+ T DE+ SDS+    P+   E   I +EV+    ++G  D  I  N                  V+DIVD+F+L    +  KK++  Y+K F++ +   L E   +R EIFK   +   K +L+   D +F++GES+  +  L+++YYK     P F+YI+D L E K
Sbjct:    1 MKVYKDIFTNDEVCSDSYAQEDPFGNPEFREIAFEVKSNKRIKGNDDYGIADNSEDAVEGMGADVEH----VIDIVDSFQLTST-SLSKKEYSAYVKNFMQRILKHLEEKKPDRVEIFKTKAQPLIKHILTNFDDFEFYMGESLDMEAGLIYSYYKGEEITPRFVYISDGLFEEK 170          
BLAST of GE213142 vs. ExPASy Swiss-Prot
Match: TCTP_PLAF7 (Translationally-controlled tumor protein homolog OS=Plasmodium falciparum (isolate 3D7) GN=TCTP PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.120e-16
Identity = 56/175 (32.00%), Postives = 92/175 (52.57%), Query Frame = 3
Query:   96 MLVYQDLLTGDELLSDSF----PYKETE-NGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 596
            M V++D+ T DE+ SDS+    P++  E   I +EV+    ++G  D  I  N                  V+DIVD+F+L    AF KK++  Y+K +++ +   L E   +R EIFK   +   K +L+   D +F++GES+  +  ++++YYK     P F+YI+D L E K
Sbjct:    1 MKVFKDVFTNDEVCSDSYVQQDPFEVPEFREIAFEVKSNKRIKGNEDYGIADNSEDAVEGMGADVEH----VIDIVDSFQLTST-AFSKKEYSAYIKNYMQKVAKYLEEKKPDRVEIFKTKAQPFIKHILTNFDDFEFYMGESLDMEAGIIYSYYKGEEITPRFVYISDGLFEEK 170          
BLAST of GE213142 vs. ExPASy Swiss-Prot
Match: TCTP_PLAYO (Translationally-controlled tumor protein homolog OS=Plasmodium yoelii yoelii GN=TCTP PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.616e-16
Identity = 56/175 (32.00%), Postives = 90/175 (51.43%), Query Frame = 3
Query:   96 MLVYQDLLTGDELLSDSF----PYKETE-NGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 596
            M VY+D+ T DE+ SDS+    P+   E   I +EV+    ++G  D  I  N                  V+DIVD+F+L    +  KK++  Y+K F++ +   L E   +R +IFK   +   K +L+   D +F++GES+  +  L+++YYK     P F+YI+D L E K
Sbjct:    1 MKVYKDIFTNDEVCSDSYIQEDPFGNPEFREIAFEVKSNKRIKGNDDYGIADNSEDAVDGMGADVEH----VIDIVDSFQLTST-SLSKKEYSAYVKNFMQRILKHLEEKKPDRVDIFKTKAQPLIKHILTNFDDFEFYMGESLDMEAGLIYSYYKGEEITPRFVYISDGLFEEK 170          
BLAST of GE213142 vs. ExPASy Swiss-Prot
Match: TCTP_PLABA (Translationally-controlled tumor protein homolog OS=Plasmodium berghei (strain Anka) GN=TCTP PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.723e-16
Identity = 56/175 (32.00%), Postives = 89/175 (50.86%), Query Frame = 3
Query:   96 MLVYQDLLTGDELLSDSF----PYKETE-NGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 596
            M VY+D+ T DE+ SDS+    P+   E   I +EV+    ++G  D  I  N                  V+DIVD+F+L    +  KK++  Y+K F++ +   L E   +R  IFK   +   K +L+   D +F++GES+  +  L+++YYK     P F+YI+D L E K
Sbjct:    1 MKVYKDIFTNDEVCSDSYIQEDPFGNAEFREIAFEVKSNKRIKGNDDYGIADNSEDAVDGMGADVEH----VIDIVDSFQLTST-SLSKKEYSAYVKNFMQRILKHLEEKKPDRVNIFKTKAQPLIKHILTNFDDFEFYMGESLDMEAGLIYSYYKGEEITPRFVYISDGLFEEK 170          
BLAST of GE213142 vs. ExPASy Swiss-Prot
Match: TCTP_USTMA (Translationally-controlled tumor protein homolog OS=Ustilago maydis GN=UM01283 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.056e-16
Identity = 52/158 (32.91%), Postives = 83/158 (52.53%), Query Frame = 3
Query:  132 LLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 596
            + SD +  K  E+ +++EV+   +V    DVDIGANPS               +V++IV +FRLQ    FDKK ++ Y+K ++K +  KL+E   +R   F+K      K ++   +D +FF GESM  +G +    Y+E    P  ++  D L+E K
Sbjct:    1 MCSDGYEMKLVED-VVYEVDAAKIVVSDGDVDIGANPSAEEAAEALENGAE--QVINIVHSFRLQSTQ-FDKKSYLAYLKGYMKSVKAKLAESNPDRVPAFEKGAAAFAKKIVGSFNDWEFFTGESMDPEGMVALLNYREDGVTPYLVFWKDGLRETK 154          
BLAST of GE213142 vs. ExPASy Swiss-Prot
Match: TCTP_THEPA (Translationally-controlled tumor protein homolog OS=Theileria parva GN=TCTP PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.056e-16
Identity = 56/173 (32.37%), Postives = 88/173 (50.87%), Query Frame = 3
Query:   96 MLVYQDLLTGDELLSDSF----PYKETE-NGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKE 590
            M VY+DL + DE+ SD++    P+   + + + +EV+   V +G  D  IG N                  VVD+VD F LQ   +  KK + +Y++++I+ L   L E   ER E FK  +    K +L+   D +F+VGES+  +  LV+AYYK     P  +++ D L E
Sbjct:    1 MKVYKDLYSNDEVCSDAYDHHDPFDNADLSSVAFEVKTSKVPKGEEDYGIGYNDEEGADQMNVDPNVEM--VVDVVDKFGLQSL-SLTKKDYSSYIRKYIQRLVATLQEKNPERVEPFKTTVSDFVKHVLANFEDFEFYVGESLDYEAGLVYAYYKGEEVSPRLVFLKDGLVE 170          
BLAST of GE213142 vs. ExPASy Swiss-Prot
Match: TCTP_PLAKN (Translationally-controlled tumor protein homolog OS=Plasmodium knowlesi GN=TCTP PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.795e-15
Identity = 53/175 (30.29%), Postives = 89/175 (50.86%), Query Frame = 3
Query:   96 MLVYQDLLTGDELLSDSFPYKETEN-----GILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 596
            M VY+D+ T DE+ SDS+  ++         I +EV+    ++G  D  I  N                 +V+DIVD+F+L    +  KK++  Y+K +++ +   L E   +R ++FK   +   K +L+   D +F++GES+  D  L ++YYK     P F+YI+D L E K
Sbjct:    1 MKVYKDVFTNDEVCSDSYNQEDPFGIADFREIAFEVKSNKRIKGNDDYGIADNSEEAVDGMGADVE----QVIDIVDSFQLTST-SLSKKEYSVYIKNYMQKILKYLEEKKPDRVDVFKTKAQPLIKHILTNFDDFEFYMGESLDMDAGLTYSYYKGEEVTPRFVYISDGLYEEK 170          
The following BLAST results are available for this feature:
BLAST of GE213142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
TCTP_DROPS1.468e-1732.57Translationally-controlled tumor protein homolog O... [more]
TCTP_CHICK1.917e-1732.18Translationally-controlled tumor protein homolog O... [more]
TCTP_THEAN1.243e-1632.95Translationally-controlled tumor protein homolog O... [more]
TCTP_PLACH1.623e-1632.57Translationally-controlled tumor protein homolog O... [more]
TCTP_PLAF72.120e-1632.00Translationally-controlled tumor protein homolog O... [more]
TCTP_PLAYO3.616e-1632.00Translationally-controlled tumor protein homolog O... [more]
TCTP_PLABA4.723e-1632.00Translationally-controlled tumor protein homolog O... [more]
TCTP_USTMA8.056e-1632.91Translationally-controlled tumor protein homolog O... [more]
TCTP_THEPA8.056e-1632.37Translationally-controlled tumor protein homolog O... [more]
TCTP_PLAKN1.795e-1530.29Translationally-controlled tumor protein homolog O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC5 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213142 ID=GE213142; Name=GE213142; organism=Citrus sinensis; type=EST; length=787bp
ATTAGCGTGGTCGCGGCCGAGGTCTCTCTCTCTCTCTCTCCAGTTTTCTC
CGTTGATTATTTTTCTTTTTTGTGTTCGCGAGAGAGACTGCAATCATGTT
GGTCTATCAAGATCTCCTCACCGGTGATGAGCTTCTCTCCGACTCTTTTC
CCTACAAGGAAACTGAGAATGGGATTCTGTGGGAAGTTGAGGGAAAGTGG
GTTGTACAAGGAGCCGTTGATGTTGACATTGGTGCAAATCCTTCTGCCGA
AGGAGCTGATGAGGATGAGGGTGTTGATGACCAAGCCGTGAAGGTGGTCG
ACATTGTCGACACATTCAGGCTGCAGGAGCAACCTGCTTTTGACAAGAAG
CAGTTTGTAACATACATGAAGAGATTCATCAAGTTGCTGACGCCCAAGCT
GAGTGAGGAGAGGCAGGAGATATTTAAGAAGAATATTGAGGGAGCGACCA
AGTTCTTGCTCTCGAAGCTCAGTGACCTTCAATTCTTTGTTGGGGAGAGC
ATGCATGATGATGGCTGTCTTGTCTTTGCTTACTACAAGGAAGGTGCGAC
CGACCCAACATTTTTGTATATTGCTGATGCATTGAAGGAGGTGAAGTGCT
AAGCCGGGCTTCGAAGAGGAAGTGCCTGCTGTAGTTCTAGTTTTAATTAT
TGCCCGCGGTTATTTTTATGTATCTTTTGTACTGGTTTACTCGGGACTTG
TGCTTGCTGTTTTTTAGTTTTTATTTTGACATAAACAATATGTTTTTCTG
CTCCTAATTATTGGGTTTTAATGGTTTGATTACCGAA
back to top