GE213142

Overview
NameGE213142
Unique NameGE213142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GE213142_ssr23 microsatellite GE213142_ssr23:23..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4376 contig Csv1_Contig4376:151..937. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of GE213142 vs. ExPASy Swiss-Prot
Match: TCTP_ASPFU (Translationally-controlled tumor protein homolog OS=Aspergillus fumigatus GN=AFUA_1G16840 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.137e-12
Identity = 53/179 (29.61%), Postives = 87/179 (48.60%), Query Frame = 3 
Query:   96 MLVYQDLLTGDELLSDSFPYKETENGILWEVE-GKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXXKVVDIVDTFRL-----QEQPAFDKKQFVTYMKRFIKLLTPKLSEE-----RQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 596
            M++Y+D+++GDE+LSD+F  KE + G+L+E +  K++ +   D+ + GANPS                V DI D FRL     +E     K  F +++K ++K +  KL E+       + FKK    A K +L+   +    +G SM  D   V   ++E    P        L+E+K
Sbjct:    1 MIIYKDIISGDEVLSDNFKIKEVD-GVLYECDCRKYLKRKNEDIQLEGANPSAEEGDDDAGGDGEEVMVHDIEDQFRLVWLKTEEGMKPSKDAFKSHLKTYMKKVLAKLQEKGVPEAEIDAFKKGAPAAVKKILANYDNYDVLMGHSMDGDAMHVLIDFREDGVTPYATLWKHGLEEMK 178
[Close]
BLAST of GE213142 vs. ExPASy Swiss-Prot
Match: TCTP_EMENI (Translationally-controlled tumor protein homolog OS=Emericella nidulans GN=AN0641 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.974e-11
Identity = 54/179 (30.17%), Postives = 83/179 (46.37%), Query Frame = 3 
Query:   96 MLVYQDLLTGDELLSDSFPYKETENGILWEVE-GKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFD---------KKQFVTYMKRFIKLLTPK-LSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 596
            M++Y+D+++GDE+LSD++  K T +G+L+E +  K++ +   D ++ GANPS                V DI D FRL    A D         K    TYMK+ +K L  K   +E    FKK    A   +L    +    +GESM  D   +   ++E    P        L+E+K
Sbjct:    1 MIIYKDIISGDEVLSDTYNIK-TVDGVLYECDCRKYLKKTNEDFELEGANPSAEGGDDEGGAEGGEVMVHDIEDQFRLVWLKAEDGAKPPKDAFKGHLKTYMKKVLKALQDKGAPDETINEFKKGAPAAVNKILKNYDNYDVLMGESMDGDAMHILIDFREDGVTPYATLWKHGLEEMK 178
The following BLAST results are available for this feature:
BLAST of GE213142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
TCTP_ASPFU4.137e-1229.61Translationally-controlled tumor protein homolog O... [more]
TCTP_EMENI5.974e-1130.17Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionC5 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213142 ID=GE213142; Name=GE213142; organism=Citrus sinensis; type=EST; length=787bp
ATTAGCGTGGTCGCGGCCGAGGTCTCTCTCTCTCTCTCTCCAGTTTTCTC
CGTTGATTATTTTTCTTTTTTGTGTTCGCGAGAGAGACTGCAATCATGTT
GGTCTATCAAGATCTCCTCACCGGTGATGAGCTTCTCTCCGACTCTTTTC
CCTACAAGGAAACTGAGAATGGGATTCTGTGGGAAGTTGAGGGAAAGTGG
GTTGTACAAGGAGCCGTTGATGTTGACATTGGTGCAAATCCTTCTGCCGA
AGGAGCTGATGAGGATGAGGGTGTTGATGACCAAGCCGTGAAGGTGGTCG
ACATTGTCGACACATTCAGGCTGCAGGAGCAACCTGCTTTTGACAAGAAG
CAGTTTGTAACATACATGAAGAGATTCATCAAGTTGCTGACGCCCAAGCT
GAGTGAGGAGAGGCAGGAGATATTTAAGAAGAATATTGAGGGAGCGACCA
AGTTCTTGCTCTCGAAGCTCAGTGACCTTCAATTCTTTGTTGGGGAGAGC
ATGCATGATGATGGCTGTCTTGTCTTTGCTTACTACAAGGAAGGTGCGAC
CGACCCAACATTTTTGTATATTGCTGATGCATTGAAGGAGGTGAAGTGCT
AAGCCGGGCTTCGAAGAGGAAGTGCCTGCTGTAGTTCTAGTTTTAATTAT
TGCCCGCGGTTATTTTTATGTATCTTTTGTACTGGTTTACTCGGGACTTG
TGCTTGCTGTTTTTTAGTTTTTATTTTGACATAAACAATATGTTTTTCTG
CTCCTAATTATTGGGTTTTAATGGTTTGATTACCGAA
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