FE659327 | Citrus Genome Database

Overview


Name	FE659327
Unique Name	FE659327
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	489

Libraries


Library Name	Type
Hong Anliu sweet orange SSH library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 2.006e-47
Identity = 94/163 (57.67%), Postives = 123/163 (75.46%), Query Frame = 1

Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+  D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  E   DE LK +FG++G   S  VM D  GKSK FGFV+FE  +DA KAVD +NGK+ + ++
Sbjct:   99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260

HSP 2 Score: 146.747 bits (369), Expect = 5.126e-35
Identity = 79/167 (47.31%), Postives = 107/167 (64.07%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 468
            N++IKN  + +D + L D F  FG  LS K+ TD SG+SKGFGFV FE  E AQ A+D++NG  +N KQ++VG   +K ER+T  +K KF              N++VKNLD+   DE L+K F  +GTITSA VM +G G+SK FGFV F + ++A KAV  +NG+
Sbjct:  192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGR 356

HSP 3 Score: 85.1149 bits (209), Expect = 1.832e-16
Identity = 50/161 (31.06%), Postives = 90/161 (55.90%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            ++++ +L   +    L++ FS  G ILS ++  D  + +S G+ +V F+    A+ A+D +N  +I  K V +       +R+    K+   N+F+KNLD+S  ++ L   F  +G I S  V+ D +G SK +GFV+FE  + A +A++ +NG   +DR+
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167

HSP 4 Score: 74.3294 bits (181), Expect = 3.233e-13
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 252
            N+++KNLD  ID + L   FS FG I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375

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BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.006e-47
Identity = 94/163 (57.67%), Postives = 123/163 (75.46%), Query Frame = 1

Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+  D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  E   DE LK +FG++G   S  VM D  GKSK FGFV+FE  +DA KAVD +NGK+ + ++
Sbjct:   99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260

HSP 2 Score: 146.747 bits (369), Expect = 5.126e-35
Identity = 79/167 (47.31%), Postives = 107/167 (64.07%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 468
            N++IKN  + +D + L D F  FG  LS K+ TD SG+SKGFGFV FE  E AQ A+D++NG  +N KQ++VG   +K ER+T  +K KF              N++VKNLD+   DE L+K F  +GTITSA VM +G G+SK FGFV F + ++A KAV  +NG+
Sbjct:  192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGR 356

HSP 3 Score: 85.1149 bits (209), Expect = 1.832e-16
Identity = 50/161 (31.06%), Postives = 90/161 (55.90%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            ++++ +L   +    L++ FS  G ILS ++  D  + +S G+ +V F+    A+ A+D +N  +I  K V +       +R+    K+   N+F+KNLD+S  ++ L   F  +G I S  V+ D +G SK +GFV+FE  + A +A++ +NG   +DR+
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167

HSP 4 Score: 74.3294 bits (181), Expect = 3.233e-13
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 252
            N+++KNLD  ID + L   FS FG I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375

[Close]

BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 2.620e-47
Identity = 95/162 (58.64%), Postives = 121/162 (74.69%), Query Frame = 1

Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 483
            GNIFIKNLDKSID+KAL+DTFS+FGNILSCK+  D +G SKG+GFV FE +E+A+ AIDK+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  E   DE LK+ FG+YG   S  VM D  GKS+ FGFV+FE  +DA KAVD +NGK  + +
Sbjct:   99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGK 259

HSP 2 Score: 136.346 bits (342), Expect = 6.928e-32
Identity = 74/167 (44.31%), Postives = 104/167 (62.28%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 468
            N++IKN  + +D + L + F  +G  LS K+ TD  G+S+GFGFV FE  E AQ A+D +NG  +N K +FVG   +K ER+T  +K KF              N++VKNLD+   DE L+K F  +G+ITSA VM +G G+SK FGFV F + ++A KAV  +NG+
Sbjct:  192 NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGR 356

HSP 3 Score: 86.6557 bits (213), Expect = 6.295e-17
Identity = 51/161 (31.68%), Postives = 90/161 (55.90%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            ++++ +L   +    L++ FS  G ILS ++  D  + +S G+ +V F+    A+ A+D +N  +I  K V +       +R+    K+   N+F+KNLD+S  ++ L   F  +G I S  V+ D +G SK +GFV+FE  + A +A+D +NG   +DR+
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRK 167

HSP 4 Score: 73.559 bits (179), Expect = 5.515e-13
Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 252
            N+++KNLD  ID + L   F+ FG+I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  295 NLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375

[Close]

BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 5.838e-47
Identity = 91/163 (55.83%), Postives = 123/163 (75.46%), Query Frame = 1

Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            GNIFIKNL  +ID+KALHDTFS+FG ILSCK+ATD  GQSK FGFV +E  E+A+ AI+ +NGML+ND++VFVG  + K++RE+    IK  F N++VKN+D   ++EDLKK+F  YG ITS  + +D +GKSK FGFVN+E  + A KAV+ LN K+ + ++
Sbjct:  140 GNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQK 302

HSP 2 Score: 120.168 bits (300), Expect = 5.138e-27
Identity = 66/168 (39.29%), Postives = 98/168 (58.33%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKF 474
            NI++KN+D     + L   F+ +G I S  +  D  G+SKGFGFV +E  E+A  A+++LN   IN ++++VG   +K+ER     K   N            N+F+KNLD++   E L++ F  +GTITSA VM D  GKSK FGFV F + ++A KA+  +N + F
Sbjct:  234 NIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMF 401

HSP 3 Score: 90.1225 bits (222), Expect = 5.694e-18
Identity = 49/163 (30.06%), Postives = 87/163 (53.37%), Query Frame = 1

Query:    1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            T ++++  L+ S++   L + FS  G + S ++  D  S +S G+ +V +   E  + AI++LN   I  +   +       +R+  A ++   N+F+KNL  +  ++ L   F  +G I S  V  D  G+SKCFGFV++E  + A  A++ +NG   +DRE
Sbjct:   51 TASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEELNYSPIEGRPCRI----MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDRE 209

HSP 4 Score: 70.4774 bits (171), Expect = 4.669e-12
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 255
            N+FIKNLD +ID + L + F  FG I S ++  D +G+SKGFGFV F + E A  AI ++N  +   K ++V    RK  R +
Sbjct:  337 NLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDVRRS 419

[Close]

BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 5.838e-47
Identity = 86/158 (54.43%), Postives = 121/158 (76.58%), Query Frame = 1

Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471
            GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+GFV +E  E+A NAI  +NGML+NDK+VFVGH + K++R++    +K  F NV++KN+D+  T+E+ +++F ++G ITSA + RD +GKS+ FGFVNF   + A  AVD +N K+
Sbjct:  137 GNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKE 294

HSP 2 Score: 108.612 bits (270), Expect = 1.547e-23
Identity = 56/137 (40.88%), Postives = 82/137 (59.85%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE------------TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 381
            N++IKN+D+ +  +   + F  FG I S  ++ D  G+S+GFGFV F   ESAQ A+D++N   I  ++++VG   +K ERE              A K +  N++VKNL +   DE L+++FG YGTITSA VMRD
Sbjct:  231 NVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD 367

HSP 3 Score: 89.7373 bits (221), Expect = 7.436e-18
Identity = 49/163 (30.06%), Postives = 86/163 (52.76%), Query Frame = 1

Query:    1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            + ++++  LD S+    L++ FSS G + S ++  D  + +S G+ +V + N    + A++ LN  LI  K   +       +R+    KT   NVF+KNLD +  ++ L   F  +G I S  V +D  G SK +GFV++E  + A  A+  +NG   +D++
Sbjct:   48 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKK 206

[Close]

BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 7.624e-47
Identity = 87/159 (54.72%), Postives = 122/159 (76.73%), Query Frame = 1

Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKF 474
            GNIFIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+GFV +E  E+A  AI  +NGML+N+K+V+VGH + K++R++    +K  F NV+VKN++   TDE+ +++F ++G +TS+ + RD +GKS+ FGFVNF   + AA+AVD LNGK F
Sbjct:  148 GNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDF 306

HSP 2 Score: 113.62 bits (283), Expect = 4.809e-25
Identity = 71/212 (33.49%), Postives = 102/212 (48.11%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT-------KFN-----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD--------------------------------------GD---GKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 483
            N+++KN++  +  +   + F+ FG + S  +A D  G+S+GFGFV F   E+A  A+D+LNG     + ++VG   +K ERE    K+       K N     N+++KNL +   D+ L+ +F EYG ITSA VMRD                                      GD   GKSK FGFV F N DDA KAV  +N +  D +
Sbjct:  242 NVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGK 453

HSP 3 Score: 83.9593 bits (206), Expect = 4.080e-16
Identity = 44/163 (26.99%), Postives = 87/163 (53.37%), Query Frame = 1

Query:    1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            + ++++  LD S+    L + FS  G++ S ++  D  + +S G+ +V +      + A+++LN  LI  +   +       +R+    KT   N+F+KNLD +  ++ L   F  +G I S  V +D  G SK +GFV++E  + A++A+  +NG   ++++
Sbjct:   59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRI----MWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKK 217

[Close]

BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.301e-46
Identity = 86/158 (54.43%), Postives = 121/158 (76.58%), Query Frame = 1

Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471
            GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+GFV +E  E+A NAI  +NGML+NDK+VFVGH + K++R++    +K  F NV++KNLD+  ++E+ +++F ++G ITSA + RD +GKS+ FGFVN+   D A  AVD +N K+
Sbjct:  136 GNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKE 293

HSP 2 Score: 108.997 bits (271), Expect = 1.184e-23
Identity = 71/222 (31.98%), Postives = 104/222 (46.85%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE------------TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-------------------------------------GD--------------GKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 483
            N++IKNLD+ I  +     F  FG I S  ++ D  G+S+GFGFV +   +SAQ A+D++N   +  ++++VG   +K ERE              A K +  N++VKNL +   DE L+++F  YGTITSA VMRD                                     GD              GKSK FGFV F + D+A+KAV  +N +  + +
Sbjct:  230 NVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDDQDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGK 451

HSP 3 Score: 89.3521 bits (220), Expect = 9.712e-18
Identity = 49/163 (30.06%), Postives = 86/163 (52.76%), Query Frame = 1

Query:    1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            + ++++  LD S+    L++ FSS G + S ++  D  + +S G+ +V + N    + A++ LN  LI  K   +       +R+    KT   NVF+KNLD +  ++ L   F  +G I S  V +D  G SK +GFV++E  + A  A+  +NG   +D++
Sbjct:   47 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKK 205

[Close]

BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.699e-46
Identity = 85/158 (53.80%), Postives = 120/158 (75.95%), Query Frame = 1

Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471
            GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+GFV +E  E+A NAI  +NGML+NDK+VFVGH + K++R++    +K  F N+++KN+D   T+E+ +KIF ++G ITSA + RD +GKS+ FGFVN+   + A  AVD ++ K+
Sbjct:  139 GNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKE 296

HSP 2 Score: 104.76 bits (260), Expect = 2.234e-22
Identity = 62/173 (35.84%), Postives = 93/173 (53.76%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE------------TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVD-DAAKAVDALNGKKFDDRE 486
            NI+IKN+D  +  +     F  FG I S  ++ D  G+S+GFGFV +   ESAQ A+D+++   +  ++++VG   +K ERE              A K +  N++VKNL +   DE L+++FG YGTITSA VMRD     +       E  D +  K V+  N KK D+ +
Sbjct:  233 NIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDSTPAERT------ETPDSEKEKEVNKENEKKEDEEK 399

HSP 3 Score: 89.7373 bits (221), Expect = 7.436e-18
Identity = 49/163 (30.06%), Postives = 86/163 (52.76%), Query Frame = 1

Query:    1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            + ++++  LD S+    L++ FSS G + S ++  D  + +S G+ +V + N    + A++ LN  LI  K   +       +R+    KT   NVF+KNLD +  ++ L   F  +G I S  V +D  G SK +GFV++E  + A  A+  +NG   +D++
Sbjct:   50 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKK 208

[Close]

BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 2.218e-46
Identity = 85/158 (53.80%), Postives = 119/158 (75.32%), Query Frame = 1

Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471
            GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+GFV +E  E+A NAI  +NGML+NDK+VFVGH + K++R++    +K  F N+++KN+D    DE+ +K+F ++G ITSA + RD +GKS+ FGFVNF   + A  AV+ +N K+
Sbjct:  130 GNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKE 287

HSP 2 Score: 106.301 bits (264), Expect = 7.678e-23
Identity = 54/137 (39.42%), Postives = 81/137 (59.12%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE------------TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 381
            NI+IKN+D  ++ +     F  FG I S  ++ D  G+S+GFGFV F   ESAQ A++++N   +  ++++VG   +K ERE              A K +  N++VKNL +   D+ L+++FG YGTITSA VMRD
Sbjct:  224 NIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRD 360

HSP 3 Score: 88.9669 bits (219), Expect = 1.268e-17
Identity = 49/163 (30.06%), Postives = 87/163 (53.37%), Query Frame = 1

Query:    1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            + ++++  LD S+    L++ FSS G + S ++  D  + +S G+ +V + +    + A+D+LN  LI  K   +       +R+    KT   NVF+KNLD +  ++ L   F  +G I S  V +D  G SK +GFV++E  + A  A+  +NG   +D++
Sbjct:   41 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKK 199

[Close]

BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 2.897e-46
Identity = 86/158 (54.43%), Postives = 119/158 (75.32%), Query Frame = 1

Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471
            GN+FIKNLD +ID+KALHDTF++FGNILSCK+A D  G SKG+GFV +E  E+A NAI  +NGML+NDK+VFVGH + K++R++    +K  F NV++KNLD    D++ +K+F ++G ITSA + RD +GKS+ FGFVNF   + A  AV+ +N K+
Sbjct:  142 GNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKE 299

HSP 2 Score: 108.612 bits (270), Expect = 1.547e-23
Identity = 58/137 (42.34%), Postives = 80/137 (58.39%), Query Frame = 1

Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE------------TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 381
            N++IKNLD  ID       F  FG I S  ++ D  G+S+GFGFV F   ESAQ A++++N   I  ++++VG   +K ERE              A K +  N++VKNL +   DE L+++FG YGTITSA VMRD
Sbjct:  236 NVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD 372

HSP 3 Score: 89.7373 bits (221), Expect = 7.436e-18
Identity = 49/163 (30.06%), Postives = 86/163 (52.76%), Query Frame = 1

Query:    1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            + ++++  LD S+    L++ FSS G + S ++  D  + +S G+ +V + N    + A++ LN  LI  K   +       +R+    KT   NVF+KNLD +  ++ L   F  +G I S  V +D  G SK +GFV++E  + A  A+  +NG   +D++
Sbjct:   53 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKK 211

The following BLAST results are available for this feature:

BLAST of FE659327 vs. ExPASy Swiss-Prot

BLAST of FE659327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150


Match Name	E-value	Identity	Description
PABP1_HUMAN	2.006e-47	57.67	Polyadenylate-binding protein 1 OS=Homo sapiens GN...	[more]
PABP1_BOVIN	2.006e-47	57.67	Polyadenylate-binding protein 1 OS=Bos taurus GN=P...	[more]
PABPB_XENLA	2.620e-47	58.64	Polyadenylate-binding protein 1-B OS=Xenopus laevi...	[more]
PABP_PICST	5.838e-47	55.83	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_ASPOR	5.838e-47	54.43	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_NEUCR	7.624e-47	54.72	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_ASPTN	1.301e-46	54.43	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_ASPCL	1.699e-46	53.80	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_EMENI	2.218e-46	53.80	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_ASPNC	2.897e-46	54.43	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]

Pages

Properties


Property Name	Value
Genbank description	A141 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FE659327 ID=FE659327; Name=FE659327; organism=Citrus sinensis; type=EST; length=489bp
ACTGGGAACATATTTATCAAGAATTTGGACAAGTCTATTGATCACAAAGC
ATTACACGATACATTTTCTTCATTCGGAAACATTCTTTCTTGTAAGATAG
CTACTGATGGTTCTGGCCAGTCCAAAGGTTTCGGTTTTGTGCAATTTGAG
AACAAAGAATCTGCTCAAAATGCTATTGATAAGTTAAATGGCATGCTTAT
TAATGATAAACAAGTGTTCGTTGGGCACTTTCTTCGTAAGCAGGAAAGAG
AAACTGTAGCAATTAAAACAAAATTCAATAACGTATTTGTCAAAAACCTT
GATGAGTCAACTACAGATGAAGATTTGAAGAAAATTTTTGGTGAGTATGG
AACAATTACCAGTGCAGTAGTGATGAGGGATGGAGATGGAAAATCCAAGT
GTTTTGGATTTGTGAATTTTGAAAATGTAGATGATGCTGCCAAAGCTGTT
GATGCTCTTAATGGAAAGAAATTTGATGACAGAGAATGG