FE659327

Overview
NameFE659327
Unique NameFE659327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: MRD1_ASHGO (Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii GN=MRD1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.317e-11
Identity = 47/164 (28.66%), Postives = 78/164 (47.56%), Query Frame = 1
Query:    1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ------SKGFGFVQFENKESAQNAIDKLNGMLINDK--QVFVGHFLRKQERETVAIKTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 465
            T +IF+KNL+ S     L + F  F   +  ++ T    +      S GFGF++F  KE A   I  ++G +I+    Q+ + H      + +   K K +  + VKNL    T +D+ ++F  +G + S  V +  D  ++ F FV F    +A  A+D L G
Sbjct:  611 TVSIFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTKEQAGAVIAAMDGAVIDGHKIQLKISHKQSSLPKTSKGSKKKISGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPSEAENAMDQLQG 774          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: NOP4_YEAST (Nucleolar protein 4 OS=Saccharomyces cerevisiae GN=NOP4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.026e-11
Identity = 52/196 (26.53%), Postives = 81/196 (41.33%), Query Frame = 1
Query:   10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTT--------DED-----------------------------LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            +F++++ + +  + L D FS+F  I    +  D + +S+GFGFV F  ++  + A+ K        K  F GH LR    +      K + V  K+  ES+         DED                             LKKIFG YGT+  A + R  DGK   F FV  + + +   A++     K D R+
Sbjct:   28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDTKEALAKAR------KTKFNGHILRVDIAKRRDRSKKTSEVVEKSTPESSEKITGQNNEDEDDADGEDSMLKGKPKLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRDGKLCGFAFVTMKKISNCRIALENTKDLKIDGRK 217          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.952e-11
Identity = 53/178 (29.78%), Postives = 82/178 (46.07%), Query Frame = 1
Query:   10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-----GQSKGFG-----------FVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            +++ NL + +    +   FS  G   SCK+ T+         S GF            FV+F     A  A+  +NG  I  K+V V        Q+++T    +   +VFV +L    T ED+K  F  +G I+ A V++D   GKSK +GFV+F N  DA  A+  + G+    R+
Sbjct:   11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT----SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ROAA_HUMAN (Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens GN=HNRNPAB PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.952e-11
Identity = 47/164 (28.66%), Postives = 80/164 (48.78%), Query Frame = 1
Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID----KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLD-ESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKF 474
            G +F+  L      K L D F+ FG ++ C I  D  +G+S+GFGF+ F++  S +  +D    +L+G +I+ K+                 K     +FV  L+ ES T+E +++ FGE+G I +  +  D    K + F F+ F+  +   K ++    KKF
Sbjct:   69 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAM------------AMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE----KKF 216          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: RBM41_DANRE (RNA-binding protein 4.1 OS=Danio rerio GN=rbm4.1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.952e-11
Identity = 43/158 (27.22%), Postives = 72/158 (45.57%), Query Frame = 1
Query:   10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 483
            IF+ NL  +   + +   FS +G I  C I        K FGFV  ++K  A  AI  L+  ++N   + V     K +  T         + V N+  S T+++L+  F EYG +    +++D       + FV+ E V+DA +A+  L+   F  +
Sbjct:    4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIV-------KNFGFVHMDSKSEADEAIQNLHHYMLNGMAMNVEMSKGKPKTST--------KLHVGNISSSCTNQELRAKFEEYGPVVECDIVKD-------YAFVHMERVEDAMEAISGLDNTAFQGK 139          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.952e-11
Identity = 48/162 (29.63%), Postives = 80/162 (49.38%), Query Frame = 1
Query:   10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK---LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKFDD 480
            +FI  L+       L + F  +G +   KI  D  +G+S+GFGF+ FE   S    +     L+G +I+ K+      + + E++      K   +FV  +      ++ ++ F ++GTI  A +M D D G+S+ FGFV +    D+A AVD +   KF D
Sbjct:  161 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRA-----IPRDEQD------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY----DSADAVDRVCQNKFID 307          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: MRD1_NEUCR (Multiple RNA-binding domain-containing protein 1 OS=Neurospora crassa GN=mrd-1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.162e-11
Identity = 44/167 (26.35%), Postives = 80/167 (47.90%), Query Frame = 1
Query:    1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR------KQERETVAIKT--KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDAL 459
            T ++F++NL+ S   + L D F      +  K+ T       G   S GFGFV F  K+ AQ A+  ++G +++  ++ V    R      ++ RE +A K   +   + VKNL    T ++++ +F  YG + +  + +  +  S+ F F  F    +A  A ++L
Sbjct:  598 TSSLFVRNLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSMGFGFVAFRTKDQAQAALKVMDGQVLDAHKISVKASHRGLDAAEERRREDMAKKAANQGTKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALNAFNSL 764          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: DAZP1_XENLA (DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.162e-11
Identity = 46/176 (26.14%), Postives = 84/176 (47.73%), Query Frame = 1
Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAI----DKLNGMLINDKQVFVGHFLRK--------QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDA----LNGKKFD 477
            G +F+  LD S   + L   FS +G ++ C I  D +  QS+GFGFV+F++       +      L+G  I+ K         +        Q++E     ++ N +FV  +  +  + +LK+ F  +G +T  V++ D +  + + FGF+ FE+     +AV+     + GKK +
Sbjct:   10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 185          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe GN=sap49 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.742e-11
Identity = 28/80 (35.00%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 243
            N+F+ NLD  +D + L+DTFS+ G ++   ++A D +G+SKG+GFV +++ E+A  AI+ +N   + +K + V +  +++
Sbjct:  100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKRE 179          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: RBMS2_BOVIN (RNA-binding motif, single-stranded-interacting protein 2 OS=Bos taurus GN=RBMS2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.805e-11
Identity = 40/155 (25.81%), Postives = 75/155 (48.39%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 468
            N++I+ L  S   + L     S+G I+S K   D +  + KG+GFV F++  +AQ A+  L    +  +        ++QE++         N+++ NL  S  +++L+ +   +G + S  ++RD  G S+  GF   E+ +     +   NGK
Sbjct:   57 NLYIRGLQPSTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA------KQQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGK 198          
The following BLAST results are available for this feature:
BLAST of FE659327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
MRD1_ASHGO2.317e-1128.66Multiple RNA-binding domain-containing protein 1 O... [more]
NOP4_YEAST3.026e-1126.53Nucleolar protein 4 OS=Saccharomyces cerevisiae GN... [more]
TIAR_MOUSE3.952e-1129.78Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=... [more]
ROAA_HUMAN3.952e-1128.66Heterogeneous nuclear ribonucleoprotein A/B OS=Hom... [more]
RBM41_DANRE3.952e-1127.22RNA-binding protein 4.1 OS=Danio rerio GN=rbm4.1 P... [more]
HRP1_YEAST3.952e-1129.63Nuclear polyadenylated RNA-binding protein 4 OS=Sa... [more]
MRD1_NEUCR5.162e-1126.35Multiple RNA-binding domain-containing protein 1 O... [more]
DAZP1_XENLA5.162e-1126.14DAZ-associated protein 1 OS=Xenopus laevis GN=daza... [more]
SAP49_SCHPO6.742e-1135.00Spliceosome-associated protein 49 OS=Schizosacchar... [more]
RBMS2_BOVIN8.805e-1125.81RNA-binding motif, single-stranded-interacting pro... [more]

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Properties
Property NameValue
Genbank descriptionA141 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659327 ID=FE659327; Name=FE659327; organism=Citrus sinensis; type=EST; length=489bp
ACTGGGAACATATTTATCAAGAATTTGGACAAGTCTATTGATCACAAAGC
ATTACACGATACATTTTCTTCATTCGGAAACATTCTTTCTTGTAAGATAG
CTACTGATGGTTCTGGCCAGTCCAAAGGTTTCGGTTTTGTGCAATTTGAG
AACAAAGAATCTGCTCAAAATGCTATTGATAAGTTAAATGGCATGCTTAT
TAATGATAAACAAGTGTTCGTTGGGCACTTTCTTCGTAAGCAGGAAAGAG
AAACTGTAGCAATTAAAACAAAATTCAATAACGTATTTGTCAAAAACCTT
GATGAGTCAACTACAGATGAAGATTTGAAGAAAATTTTTGGTGAGTATGG
AACAATTACCAGTGCAGTAGTGATGAGGGATGGAGATGGAAAATCCAAGT
GTTTTGGATTTGTGAATTTTGAAAATGTAGATGATGCTGCCAAAGCTGTT
GATGCTCTTAATGGAAAGAAATTTGATGACAGAGAATGG
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