FE659327
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: MRD1_ASHGO (Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii GN=MRD1 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.317e-11 Identity = 47/164 (28.66%), Postives = 78/164 (47.56%), Query Frame = 1 Query: 1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ------SKGFGFVQFENKESAQNAIDKLNGMLINDK--QVFVGHFLRKQERETVAIKTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 465 T +IF+KNL+ S L + F F + ++ T + S GFGF++F KE A I ++G +I+ Q+ + H + + K K + + VKNL T +D+ ++F +G + S V + D ++ F FV F +A A+D L G Sbjct: 611 TVSIFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTKEQAGAVIAAMDGAVIDGHKIQLKISHKQSSLPKTSKGSKKKISGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPSEAENAMDQLQG 774
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: NOP4_YEAST (Nucleolar protein 4 OS=Saccharomyces cerevisiae GN=NOP4 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 3.026e-11 Identity = 52/196 (26.53%), Postives = 81/196 (41.33%), Query Frame = 1 Query: 10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTT--------DED-----------------------------LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486 +F++++ + + + L D FS+F I + D + +S+GFGFV F ++ + A+ K K F GH LR + K + V K+ ES+ DED LKKIFG YGT+ A + R DGK F FV + + + A++ K D R+ Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDTKEALAKAR------KTKFNGHILRVDIAKRRDRSKKTSEVVEKSTPESSEKITGQNNEDEDDADGEDSMLKGKPKLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRDGKLCGFAFVTMKKISNCRIALENTKDLKIDGRK 217
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 3.952e-11 Identity = 53/178 (29.78%), Postives = 82/178 (46.07%), Query Frame = 1 Query: 10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-----GQSKGFG-----------FVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486 +++ NL + + + FS G SCK+ T+ S GF FV+F A A+ +NG I K+V V Q+++T + +VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+ Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT----SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ROAA_HUMAN (Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens GN=HNRNPAB PE=1 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 3.952e-11 Identity = 47/164 (28.66%), Postives = 80/164 (48.78%), Query Frame = 1 Query: 4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID----KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLD-ESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKF 474 G +F+ L K L D F+ FG ++ C I D +G+S+GFGF+ F++ S + +D +L+G +I+ K+ K +FV L+ ES T+E +++ FGE+G I + + D K + F F+ F+ + K ++ KKF Sbjct: 69 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAM------------AMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE----KKF 216
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: RBM41_DANRE (RNA-binding protein 4.1 OS=Danio rerio GN=rbm4.1 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 3.952e-11 Identity = 43/158 (27.22%), Postives = 72/158 (45.57%), Query Frame = 1 Query: 10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 483 IF+ NL + + + FS +G I C I K FGFV ++K A AI L+ ++N + V K + T + V N+ S T+++L+ F EYG + +++D + FV+ E V+DA +A+ L+ F + Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIV-------KNFGFVHMDSKSEADEAIQNLHHYMLNGMAMNVEMSKGKPKTST--------KLHVGNISSSCTNQELRAKFEEYGPVVECDIVKD-------YAFVHMERVEDAMEAISGLDNTAFQGK 139
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 3.952e-11 Identity = 48/162 (29.63%), Postives = 80/162 (49.38%), Query Frame = 1 Query: 10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK---LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKFDD 480 +FI L+ L + F +G + KI D +G+S+GFGF+ FE S + L+G +I+ K+ + + E++ K +FV + ++ ++ F ++GTI A +M D D G+S+ FGFV + D+A AVD + KF D Sbjct: 161 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRA-----IPRDEQD------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY----DSADAVDRVCQNKFID 307
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: MRD1_NEUCR (Multiple RNA-binding domain-containing protein 1 OS=Neurospora crassa GN=mrd-1 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 5.162e-11 Identity = 44/167 (26.35%), Postives = 80/167 (47.90%), Query Frame = 1 Query: 1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR------KQERETVAIKT--KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDAL 459 T ++F++NL+ S + L D F + K+ T G S GFGFV F K+ AQ A+ ++G +++ ++ V R ++ RE +A K + + VKNL T ++++ +F YG + + + + + S+ F F F +A A ++L Sbjct: 598 TSSLFVRNLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSMGFGFVAFRTKDQAQAALKVMDGQVLDAHKISVKASHRGLDAAEERRREDMAKKAANQGTKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALNAFNSL 764
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: DAZP1_XENLA (DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 5.162e-11 Identity = 46/176 (26.14%), Postives = 84/176 (47.73%), Query Frame = 1 Query: 4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAI----DKLNGMLINDKQVFVGHFLRK--------QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDA----LNGKKFD 477 G +F+ LD S + L FS +G ++ C I D + QS+GFGFV+F++ + L+G I+ K + Q++E ++ N +FV + + + +LK+ F +G +T V++ D + + + FGF+ FE+ +AV+ + GKK + Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 185
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe GN=sap49 PE=2 SV=2) HSP 1 Score: 66.6254 bits (161), Expect = 6.742e-11 Identity = 28/80 (35.00%), Postives = 54/80 (67.50%), Query Frame = 1 Query: 7 NIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 243 N+F+ NLD +D + L+DTFS+ G ++ ++A D +G+SKG+GFV +++ E+A AI+ +N + +K + V + +++ Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKRE 179
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: RBMS2_BOVIN (RNA-binding motif, single-stranded-interacting protein 2 OS=Bos taurus GN=RBMS2 PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 8.805e-11 Identity = 40/155 (25.81%), Postives = 75/155 (48.39%), Query Frame = 1 Query: 7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 468 N++I+ L S + L S+G I+S K D + + KG+GFV F++ +AQ A+ L + + ++QE++ N+++ NL S +++L+ + +G + S ++RD G S+ GF E+ + + NGK Sbjct: 57 NLYIRGLQPSTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA------KQQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGK 198 The following BLAST results are available for this feature:
BLAST of FE659327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 150
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Sequences
The
following sequences are available for this feature:
EST sequence >FE659327 ID=FE659327; Name=FE659327; organism=Citrus sinensis; type=EST; length=489bpback to top |