FE659327

Overview
NameFE659327
Unique NameFE659327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 5.654e-42
Identity = 85/163 (52.15%), Postives = 116/163 (71.17%), Query Frame = 1 
Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            GNIFIKNL  +ID+KALHDTFS+FG ILSCK+ATD  GQSK FGFV +E  E+A+ AI+ +NGML+ND++VFVG  + K++RE+    +K  F NV+VKNL     +   ++IF  +G +TS  +  D +GKS+ FGFVNFEN + A  AV  +N K+ D ++
Sbjct:  146 GNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQK 308

HSP 2 Score: 124.405 bits (311), Expect = 2.724e-28
Identity = 68/164 (41.46%), Postives = 103/164 (62.80%), Query Frame = 1 
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIK--TKFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALN 462
            N+++KNL   +D+    + F  FG + S  + TD  G+S+GFGFV FEN ESA NA+ ++N   I+ ++++VG   +K+ER        E+  ++  +K+   N+FVKNLD+S   E L++ F  +GTITSA VM D  GKSK FGFV F + ++A KA+  +N
Sbjct:  240 NVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMN 403

HSP 3 Score: 74.3294 bits (181), Expect = 3.233e-13
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 255
            N+F+KNLD SID + L + F  FG I S ++  D +G+SKGFGFV F + E A  AI ++N  +I  K ++V    RK  R +
Sbjct:  343 NLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQRKDVRRS 425
[Close]
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 5.654e-42
Identity = 82/163 (50.31%), Postives = 117/163 (71.78%), Query Frame = 1 
Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            GNIFIKNLD+SID+KALHDTF++FG+ILSCK+ TD +G+S+GF FV +   E+A  AI  +NGML+NDK+V+VGH + K+ER  +   ++ +F NV++KN+D   TD + + +   +G   S  + RD  G SK FGFVN+EN + A KAVD LN K+ + ++
Sbjct:  134 GNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKK 296

HSP 2 Score: 124.79 bits (312), Expect = 2.086e-28
Identity = 67/166 (40.36%), Postives = 95/166 (57.23%), Query Frame = 1 
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 468
            N++IKN+D  +      D    FG  +S  ++ D  G SKGFGFV +EN ESA+ A+D+LN   +N K+++ G    K ERE    K+               N++VKNLD+   D+ L+  F  +GTITS+ VMRD  G S+ FGFV + + D+A KAV  +NGK
Sbjct:  228 NVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGK 393

HSP 3 Score: 82.0333 bits (201), Expect = 1.551e-15
Identity = 46/163 (28.22%), Postives = 85/163 (52.15%), Query Frame = 1 
Query:    1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            + ++++  LD S+    L + F+  G + S ++  D  + +S G+ +V + N    + A++ LN  LI  +   +       +R+    KT   N+F+KNLD+S  ++ L   F  +G I S  V  D +GKS+ F FV++   + A  A+ A+NG   +D++
Sbjct:   45 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKGQSCRI----MWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKK 203

HSP 4 Score: 67.0106 bits (162), Expect = 5.162e-11
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 249
            N+++KNLD   D   L   F +FG I S K+  D SG S+GFGFV + + + A  A+ ++NG +I  K ++V    RK  R
Sbjct:  331 NLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVR 411
[Close]
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.702e-38
Identity = 79/159 (49.69%), Postives = 111/159 (69.81%), Query Frame = 1 
Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKF 474
            GNI+IKNLD +ID+KALHDTFS+FG ILSCKIATD  G S+GFGFV +E+ ESA++AI  +NGML+NDK+VFVG  + K +R       K  F NVF+KNL    T+ + +++  ++G  +S  +  + +GK   FGFV+++  D A KA+D L+  +F
Sbjct:  134 GNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEF 292

HSP 2 Score: 100.908 bits (250), Expect = 3.226e-21
Identity = 60/164 (36.59%), Postives = 87/164 (53.05%), Query Frame = 1 
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT-------KFN-----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALN 462
            N+FIKNL   I      +  + FG   S  ++T+  G+  GFGFV ++  + A  AID L+       ++F G   +K ER     K        K N     N+++KNLD++  D+ L+  F  +GTITSA VM D  GKSK FGFV + + ++A KAV  +N
Sbjct:  228 NVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMN 391

HSP 3 Score: 81.2629 bits (199), Expect = 2.645e-15
Identity = 43/161 (26.71%), Postives = 84/161 (52.17%), Query Frame = 1 
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            ++++  LD S+    L + F+  G + S ++  D  + +S G+ +V F N+     A+++LN   I ++   +       +R+    KT   N+++KNLD +  ++ L   F  +G I S  +  D  G S+ FGFV++E+ + A  A+  +NG   +D++
Sbjct:   47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRI----MWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKK 203
[Close]
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.220e-36
Identity = 82/164 (50.00%), Postives = 111/164 (67.68%), Query Frame = 1 
Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 483
            GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK++F EYG   S  V+RD  GKSK FGFV +E  + A KAV  L+GK  D +
Sbjct:  106 GNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267

HSP 2 Score: 117.087 bits (292), Expect = 4.350e-26
Identity = 66/166 (39.76%), Postives = 100/166 (60.24%), Query Frame = 1 
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 468
            N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNLDE+  DE LK+ F  +G+I+ A VM +  G+ K FG V F + ++A KAVD +NG+
Sbjct:  200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGR 364

HSP 3 Score: 67.0106 bits (162), Expect = 5.162e-11
Identity = 45/160 (28.12%), Postives = 84/160 (52.50%), Query Frame = 1 
Query:   10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            +++ +LD  +    L+  F   G +   +I  D   +S  G+G+V F     A+ A++ +N  LIN K       L   + +    K+   N+F+KNLD+S  +  L  +F  +G I S  V+ D +G SK + +V+F+++  A +A+  +NG + ++R+
Sbjct:   20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
[Close]
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.220e-36
Identity = 82/164 (50.00%), Postives = 111/164 (67.68%), Query Frame = 1 
Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 483
            GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK++F EYG   S  V+RD  GKSK FGFV +E  + A KAV  L+GK  D +
Sbjct:  106 GNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267

HSP 2 Score: 117.087 bits (292), Expect = 4.350e-26
Identity = 66/166 (39.76%), Postives = 100/166 (60.24%), Query Frame = 1 
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 468
            N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNLDE+  DE LK+ F  +G+I+ A VM +  G+ K FG V F + ++A KAVD +NG+
Sbjct:  200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGR 364

HSP 3 Score: 67.0106 bits (162), Expect = 5.162e-11
Identity = 45/160 (28.12%), Postives = 84/160 (52.50%), Query Frame = 1 
Query:   10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            +++ +LD  +    L+  F   G +   +I  D   +S  G+G+V F     A+ A++ +N  LIN K       L   + +    K+   N+F+KNLD+S  +  L  +F  +G I S  V+ D +G SK + +V+F+++  A +A+  +NG + ++R+
Sbjct:   20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
[Close]
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.220e-36
Identity = 82/164 (50.00%), Postives = 111/164 (67.68%), Query Frame = 1 
Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 483
            GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK++F EYG   S  V+RD  GKSK FGFV +E  + A KAV  L+GK  D +
Sbjct:  106 GNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267

HSP 2 Score: 117.087 bits (292), Expect = 4.350e-26
Identity = 66/166 (39.76%), Postives = 100/166 (60.24%), Query Frame = 1 
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 468
            N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNLDE+  DE LK+ F  +G+I+ A VM +  G+ K FG V F + ++A KAVD +NG+
Sbjct:  200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGR 364

HSP 3 Score: 67.0106 bits (162), Expect = 5.162e-11
Identity = 45/160 (28.12%), Postives = 84/160 (52.50%), Query Frame = 1 
Query:   10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            +++ +LD  +    L+  F   G +   +I  D   +S  G+G+V F     A+ A++ +N  LIN K       L   + +    K+   N+F+KNLD+S  +  L  +F  +G I S  V+ D +G SK + +V+F+++  A +A+  +NG + ++R+
Sbjct:   20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
[Close]
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.220e-36
Identity = 82/164 (50.00%), Postives = 111/164 (67.68%), Query Frame = 1 
Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 483
            GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK++F EYG   S  V+RD  GKSK FGFV +E  + A KAV  L+GK  D +
Sbjct:  106 GNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267

HSP 2 Score: 117.087 bits (292), Expect = 4.350e-26
Identity = 66/166 (39.76%), Postives = 100/166 (60.24%), Query Frame = 1 
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 468
            N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNLDE+  DE LK+ F  +G+I+ A VM +  G+ K FG V F + ++A KAVD +NG+
Sbjct:  200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGR 364

HSP 3 Score: 67.0106 bits (162), Expect = 5.162e-11
Identity = 45/160 (28.12%), Postives = 84/160 (52.50%), Query Frame = 1 
Query:   10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            +++ +LD  +    L+  F   G +   +I  D   +S  G+G+V F     A+ A++ +N  LIN K       L   + +    K+   N+F+KNLD+S  +  L  +F  +G I S  V+ D +G SK + +V+F+++  A +A+  +NG + ++R+
Sbjct:   20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
[Close]
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.220e-36
Identity = 82/164 (50.00%), Postives = 111/164 (67.68%), Query Frame = 1 
Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 483
            GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK++F EYG   S  V+RD  GKSK FGFV +E  + A KAV  L+GK  D +
Sbjct:  106 GNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267

HSP 2 Score: 117.087 bits (292), Expect = 4.350e-26
Identity = 66/166 (39.76%), Postives = 100/166 (60.24%), Query Frame = 1 
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 468
            N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNLDE+  DE LK+ F  +G+I+ A VM +  G+ K FG V F + ++A KAVD +NG+
Sbjct:  200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGR 364

HSP 3 Score: 67.0106 bits (162), Expect = 5.162e-11
Identity = 45/160 (28.12%), Postives = 84/160 (52.50%), Query Frame = 1 
Query:   10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            +++ +LD  +    L+  F   G +   +I  D   +S  G+G+V F     A+ A++ +N  LIN K       L   + +    K+   N+F+KNLD+S  +  L  +F  +G I S  V+ D +G SK + +V+F+++  A +A+  +NG + ++R+
Sbjct:   20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
[Close]
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.220e-36
Identity = 82/164 (50.00%), Postives = 111/164 (67.68%), Query Frame = 1 
Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 483
            GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   DE LK++F EYG   S  V+RD  GKSK FGFV +E  + A KAV  L+GK  D +
Sbjct:  106 GNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267

HSP 2 Score: 117.087 bits (292), Expect = 4.350e-26
Identity = 66/166 (39.76%), Postives = 100/166 (60.24%), Query Frame = 1 
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAIKTKFN----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 468
            N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K ++VG   +K ER        E + +K K       +++KNLDE+  DE LK+ F  +G+I+ A VM +  G+ K FG V F + ++A KAVD +NG+
Sbjct:  200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGR 364

HSP 3 Score: 67.0106 bits (162), Expect = 5.162e-11
Identity = 45/160 (28.12%), Postives = 84/160 (52.50%), Query Frame = 1 
Query:   10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            +++ +LD  +    L+  F   G +   +I  D   +S  G+G+V F     A+ A++ +N  LIN K       L   + +    K+   N+F+KNLD+S  +  L  +F  +G I S  V+ D +G SK + +V+F+++  A +A+  +NG + ++R+
Sbjct:   20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
[Close]
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.908e-36
Identity = 75/157 (47.77%), Postives = 108/157 (68.79%), Query Frame = 1 
Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 468
            GN+FIKNLDKSID+K L++ FS+FG ILS K+ +D  G SKG+ FV F+N+ +A  AI+++NG L+   +VFVG F  +++RE    +  ++F NV++KN      DE LK +F +YG   S  VM D  GKSK FGFV+F++ + A KAV+ +NG+
Sbjct:   98 GNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGR 253

HSP 2 Score: 124.02 bits (310), Expect = 3.558e-28
Identity = 64/167 (38.32%), Postives = 103/167 (61.68%), Query Frame = 1 
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 468
            N++IKN    +D + L D FS +G  LS K+ TD SG+SKGFGFV F++ E+A+ A++++NG  IN + +FVG   +K ER+   +K  F               +++KNLD++  DE L+  F  +G+I+   VM++ +G+SK FG + F + +DA KA+  +NG+
Sbjct:  191 NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQ-AELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGR 355

HSP 3 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 50/155 (32.26%), Postives = 85/155 (54.84%), Query Frame = 1 
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 468
            ++++ +L   +    L   FS+ G +LS +I  D  + +S G+ +V F     AQ A+D +N  +I  K +     L   +R+    ++   NVF+KNLD+S  ++ L + F  +G I S+ VM D  G SK + FV+F+N   A +A++ +NGK
Sbjct:   11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK 160
The following BLAST results are available for this feature:
BLAST of FE659327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
PABP_PICGU5.654e-4252.15Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CRYNE5.654e-4250.31Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_YARLI1.702e-3849.69Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP5_PONPY1.220e-3650.00Polyadenylate-binding protein 5 OS=Pongo pygmaeus ... [more]
PABP5_PANTR1.220e-3650.00Polyadenylate-binding protein 5 OS=Pan troglodytes... [more]
PABP5_MACMU1.220e-3650.00Polyadenylate-binding protein 5 OS=Macaca mulatta ... [more]
PABP5_HYLLA1.220e-3650.00Polyadenylate-binding protein 5 OS=Hylobates lar G... [more]
PABP5_HUMAN1.220e-3650.00Polyadenylate-binding protein 5 OS=Homo sapiens GN... [more]
PABP5_GORGO1.220e-3650.00Polyadenylate-binding protein 5 OS=Gorilla gorilla... [more]
PAB4L_HUMAN7.908e-3647.77Polyadenylate-binding protein 4-like OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionA141 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659327 ID=FE659327; Name=FE659327; organism=Citrus sinensis; type=EST; length=489bp
ACTGGGAACATATTTATCAAGAATTTGGACAAGTCTATTGATCACAAAGC
ATTACACGATACATTTTCTTCATTCGGAAACATTCTTTCTTGTAAGATAG
CTACTGATGGTTCTGGCCAGTCCAAAGGTTTCGGTTTTGTGCAATTTGAG
AACAAAGAATCTGCTCAAAATGCTATTGATAAGTTAAATGGCATGCTTAT
TAATGATAAACAAGTGTTCGTTGGGCACTTTCTTCGTAAGCAGGAAAGAG
AAACTGTAGCAATTAAAACAAAATTCAATAACGTATTTGTCAAAAACCTT
GATGAGTCAACTACAGATGAAGATTTGAAGAAAATTTTTGGTGAGTATGG
AACAATTACCAGTGCAGTAGTGATGAGGGATGGAGATGGAAAATCCAAGT
GTTTTGGATTTGTGAATTTTGAAAATGTAGATGATGCTGCCAAAGCTGTT
GATGCTCTTAATGGAAAGAAATTTGATGACAGAGAATGG
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