FE659327

Overview
NameFE659327
Unique NameFE659327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.832e-16
Identity = 48/157 (30.57%), Postives = 88/157 (56.05%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471
            N+ +  L +++  + L   F S G I SCK+  D  +GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L+++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.392e-16
Identity = 48/158 (30.38%), Postives = 87/158 (55.06%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG--SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471
            N+ +  L +++  + L   F S G I SCK+  D    GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L+++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   67 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 218          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.124e-16
Identity = 47/157 (29.94%), Postives = 87/157 (55.41%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471
            N+ +  L +++  +     F S G I SCK+  D  +GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L+++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.124e-16
Identity = 47/157 (29.94%), Postives = 87/157 (55.41%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471
            N+ +  L +++  +     F S G I SCK+  D  +GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L+++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.124e-16
Identity = 47/157 (29.94%), Postives = 87/157 (55.41%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471
            N+ +  L +++  +     F S G I SCK+  D  +GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L+++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.090e-16
Identity = 45/157 (28.66%), Postives = 85/157 (54.14%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471
            N+ +  L +++        F S G+I SCK+  D  +GQS G+GFV + +   A  AI+ LNG+ +  K + V +          +   +  N++V  L ++ + ++++++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.090e-16
Identity = 48/157 (30.57%), Postives = 87/157 (55.41%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471
            N+    L +++  + L   F S G I SCK+  D  +GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L+++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: SXL_CERCA (Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.551e-15
Identity = 50/154 (32.47%), Postives = 81/154 (52.60%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENVDDAAKAVDALN 462
            N+ +  L + +  + L+  F + G I +C+I  D  +G S G+ FV F  +  +Q AI  LNG+ + +K++ V +     E        K  N++V NL  + TD+ L  IFG+YG I    ++RD   GK +   FV F   ++A +A+ ALN
Sbjct:  111 NLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYARPGGE------SIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALN 258          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 2.645e-15
Identity = 45/157 (28.66%), Postives = 85/157 (54.14%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471
            N+ +  L +++        F S G+I SCK+  D  +GQS G+GFV + +   A  AI+ LNG+ +  K + V +          +   +  N++V  L ++ + ++++++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.454e-15
Identity = 45/157 (28.66%), Postives = 85/157 (54.14%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471
            N+ +  L +++  +     F S G I SCK+  D  +GQS G+GFV + +   A  AI+ LNG+ +  K + V +          +   +  N++V +L ++   ++++++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   35 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSY------ARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 185          
The following BLAST results are available for this feature:
BLAST of FE659327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
ELAV2_HUMAN1.832e-1630.57ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]
ELAV2_XENLA2.392e-1630.38ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]
ELAV4_RAT3.124e-1629.94ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4... [more]
ELAV4_MOUSE3.124e-1629.94ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1... [more]
ELAV4_HUMAN3.124e-1629.94ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1... [more]
ELAV3_MOUSE9.090e-1628.66ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
ELAV2_RAT9.090e-1630.57ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
SXL_CERCA1.551e-1532.47Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE... [more]
ELAV3_HUMAN2.645e-1528.66ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
ELAV3_XENLA3.454e-1528.66ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE... [more]

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Properties
Property NameValue
Genbank descriptionA141 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659327 ID=FE659327; Name=FE659327; organism=Citrus sinensis; type=EST; length=489bp
ACTGGGAACATATTTATCAAGAATTTGGACAAGTCTATTGATCACAAAGC
ATTACACGATACATTTTCTTCATTCGGAAACATTCTTTCTTGTAAGATAG
CTACTGATGGTTCTGGCCAGTCCAAAGGTTTCGGTTTTGTGCAATTTGAG
AACAAAGAATCTGCTCAAAATGCTATTGATAAGTTAAATGGCATGCTTAT
TAATGATAAACAAGTGTTCGTTGGGCACTTTCTTCGTAAGCAGGAAAGAG
AAACTGTAGCAATTAAAACAAAATTCAATAACGTATTTGTCAAAAACCTT
GATGAGTCAACTACAGATGAAGATTTGAAGAAAATTTTTGGTGAGTATGG
AACAATTACCAGTGCAGTAGTGATGAGGGATGGAGATGGAAAATCCAAGT
GTTTTGGATTTGTGAATTTTGAAAATGTAGATGATGCTGCCAAAGCTGTT
GATGCTCTTAATGGAAAGAAATTTGATGACAGAGAATGG
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