FE659327

Overview
NameFE659327
Unique NameFE659327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: SXL_DROSU (Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 4.512e-15
Identity = 48/154 (31.17%), Postives = 83/154 (53.90%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENVDDAAKAVDALN 462
            N+ +  L + +  + L+  F + G I +C+I  D  +G S G+ FV F ++  +Q AI  LNG+ + +K++ V +     E        K  N++V NL  + TD+ L  IFG+YG+I    ++RD   G+ +   FV +   ++A +A+ ALN
Sbjct:  128 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 275          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: SXL_DROME (Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.512e-15
Identity = 48/154 (31.17%), Postives = 83/154 (53.90%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENVDDAAKAVDALN 462
            N+ +  L + +  + L+  F + G I +C+I  D  +G S G+ FV F ++  +Q AI  LNG+ + +K++ V +     E        K  N++V NL  + TD+ L  IFG+YG+I    ++RD   G+ +   FV +   ++A +A+ ALN
Sbjct:  126 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 273          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.695e-15
Identity = 50/169 (29.59%), Postives = 86/169 (50.89%), Query Frame = 1
Query:   10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK---------TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 483
            IF+ NL  S D  AL + F   GN+   ++  D  +G+S+GFGFV   +KE  + A  + NG  ++ + + V      ++RE  + +            N V+V NL      + L+ +F E G +  A V+ D D G+S+ FGFV + + ++   A+++L+G   + R
Sbjct:   89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGR 257          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: MRD1_EMENI (Multiple RNA-binding domain-containing protein 1 OS=Emericella nidulans GN=mrd1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.714e-14
Identity = 50/167 (29.94%), Postives = 81/167 (48.50%), Query Frame = 1
Query:    1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV--------GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDAL 459
            T  +FIKNL+ S  +++L + F      +S +I T       G   S GFGF  F+ K  AQ A+  +NG  ++   + V            R++E     I  +   + +KNL    T +D++ +FG YG + S  V +  D  ++ FGF +F +  +A  A+DAL
Sbjct:  591 TATLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQAQAALAVMNGYTLDRHTLVVRASHKGMDAAEERRKEDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDAL 757          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: MRD1_ASPFU (Multiple RNA-binding domain-containing protein 1 OS=Aspergillus fumigatus GN=mrd1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.924e-14
Identity = 48/167 (28.74%), Postives = 80/167 (47.90%), Query Frame = 1
Query:    1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV--------GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDAL 459
            T  +F+KNL+ S  ++   + F      +S +I T       G   S GFGFV F  K  AQ A+  ++G  ++  ++ V            R++E     I  +   + +KNL    T +D++ +FG YG + S  V +  D  ++ FGF +F +  +A  A+DAL
Sbjct:  596 TSTLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQAQAALAAMDGYKLDQHELVVRASNKAMDAAEERRREDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDAL 762          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.988e-14
Identity = 45/146 (30.82%), Postives = 77/146 (52.74%), Query Frame = 1
Query:    4 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK---LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFEN 426
            G +FI  L+      +L D F  FG +L C +  D  +G+S+GFGF+ F+N +     + K   L+G +I+ K+      + ++E+E  A       +FV  +    T+E+ +  F ++G +  A +M D D G+ + FGFV +EN
Sbjct:  163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRA-----IPREEQEKTA------KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN 297          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.988e-14
Identity = 49/168 (29.17%), Postives = 87/168 (51.79%), Query Frame = 1
Query:   10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN--------VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENVDDAAKAVDALNGKKFDDR 483
            IF+  L  SID + L   F   G ++  ++  + G+ +S+G+G+V FENK  A+ AI ++ G  I+ + +       K        K KF +        +F+ NL  +   + + ++F ++G + S  +    + +  K FG+V F N++DA KA+DAL G+  D+R
Sbjct:  170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAK-KFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNR 336          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: MRD1_YARLI (Multiple RNA-binding domain-containing protein 1 OS=Yarrowia lipolytica GN=MRD1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.988e-14
Identity = 43/160 (26.88%), Postives = 86/160 (53.75%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKG------FGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 465
            ++F+KNL+     + L D F +    L  ++      ++KG      FGFV+F +KE+A+ A   ++G +++  ++ +    R Q+ ET   K   ++ + +KNL    T +D++K+FG +G++ +  V +  + +S+ F F  + +  +A  A+ AL G
Sbjct:  606 SVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEAAEIAQKAMDGHVLDGHKLQLKISNRGQDEETTETKKAIDSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNSESRGFAFAEYVSAKEAEHAMSALQG 765          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.988e-14
Identity = 45/158 (28.48%), Postives = 85/158 (53.80%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGK-SKCFGFVNFENVDDAAKAVDALNGKK 471
            N+ +  L +++  +     F S G I SCK+  D  +GQS G+GFV + +   A  AI+ LNG+ +  K + V +          +   +  N++V +L ++   ++++++F +YG  ITS +++    G  S+  GF+ F+   +A +A+  LNG+K
Sbjct:   36 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSY------ARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQK 187          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELAV_DROVI (Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.515e-14
Identity = 50/169 (29.59%), Postives = 90/169 (53.25%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS--------------GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD--GDGKSKCFGFVNFENVDDAAKAVDALNG 465
            N+ +  L +++    +   FSS G I S K+  D S              GQS G+GFV +   + A+ A++ LNG+ + +K + V  F R     + AIK    N++V  L ++ T ++L+ IF  +G I ++ ++++   D ++K  GF+ F+  ++A +A+ ALNG
Sbjct:  186 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVS-FARP---SSDAIKGA--NLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 348          
The following BLAST results are available for this feature:
BLAST of FE659327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
SXL_DROSU4.512e-1531.17Protein sex-lethal OS=Drosophila subobscura GN=Sxl... [more]
SXL_DROME4.512e-1531.17Protein sex-lethal OS=Drosophila melanogaster GN=S... [more]
ROC1_NICSY7.695e-1529.5929 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
MRD1_EMENI1.714e-1429.94Multiple RNA-binding domain-containing protein 1 O... [more]
MRD1_ASPFU2.924e-1428.74Multiple RNA-binding domain-containing protein 1 O... [more]
YHKF_SCHPO4.988e-1430.82Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]
NSR1_YEAST4.988e-1429.17Nuclear localization sequence-binding protein OS=S... [more]
MRD1_YARLI4.988e-1426.88Multiple RNA-binding domain-containing protein 1 O... [more]
ELAV3_XENTR4.988e-1428.48ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl... [more]
ELAV_DROVI6.515e-1429.59Protein elav OS=Drosophila virilis GN=elav PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionA141 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659327 ID=FE659327; Name=FE659327; organism=Citrus sinensis; type=EST; length=489bp
ACTGGGAACATATTTATCAAGAATTTGGACAAGTCTATTGATCACAAAGC
ATTACACGATACATTTTCTTCATTCGGAAACATTCTTTCTTGTAAGATAG
CTACTGATGGTTCTGGCCAGTCCAAAGGTTTCGGTTTTGTGCAATTTGAG
AACAAAGAATCTGCTCAAAATGCTATTGATAAGTTAAATGGCATGCTTAT
TAATGATAAACAAGTGTTCGTTGGGCACTTTCTTCGTAAGCAGGAAAGAG
AAACTGTAGCAATTAAAACAAAATTCAATAACGTATTTGTCAAAAACCTT
GATGAGTCAACTACAGATGAAGATTTGAAGAAAATTTTTGGTGAGTATGG
AACAATTACCAGTGCAGTAGTGATGAGGGATGGAGATGGAAAATCCAAGT
GTTTTGGATTTGTGAATTTTGAAAATGTAGATGATGCTGCCAAAGCTGTT
GATGCTCTTAATGGAAAGAAATTTGATGACAGAGAATGG
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