FE659327

Overview
NameFE659327
Unique NameFE659327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELAV_DROME (Protein elav OS=Drosophila melanogaster GN=elav PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.515e-14
Identity = 50/169 (29.59%), Postives = 90/169 (53.25%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS--------------GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD--GDGKSKCFGFVNFENVDDAAKAVDALNG 465
            N+ +  L +++    +   FSS G I S K+  D S              GQS G+GFV +   + A+ A++ LNG+ + +K + V  F R     + AIK    N++V  L ++ T ++L+ IF  +G I ++ ++++   D ++K  GF+ F+  ++A +A+ ALNG
Sbjct:  150 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVS-FARP---SSDAIKGA--NLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.508e-14
Identity = 50/175 (28.57%), Postives = 86/175 (49.14%), Query Frame = 1
Query:   10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK---------------TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 483
            IF+ NL  S D  AL + F   GN+   ++  D  +G+S+GFGFV   +KE  + A  + NG  ++ + + V      ++RE  + +                  N V+V NL      + L+ +F E G +  A V+ D D G+S+ FGFV + + ++   A+++L+G   + R
Sbjct:   89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGR 263          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 8.508e-14
Identity = 40/158 (25.32%), Postives = 85/158 (53.80%), Query Frame = 1
Query:   10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK-----TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALN 462
            +++ ++   +    +   F+ FG I S  ++ D  + + KGF FV++E  E+AQ A++++N +++  + + VG      + + +  +       FN ++V ++ +  +D+D+K +F  +G I S  + RD   GK K +GF+ +E    +  AV ++N
Sbjct:  136 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 293          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.508e-14
Identity = 40/158 (25.32%), Postives = 85/158 (53.80%), Query Frame = 1
Query:   10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK-----TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALN 462
            +++ ++   +    +   F+ FG I S  ++ D  + + KGF FV++E  E+AQ A++++N +++  + + VG      + + +  +       FN ++V ++ +  +D+D+K +F  +G I S  + RD   GK K +GF+ +E    +  AV ++N
Sbjct:  130 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 287          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 8.508e-14
Identity = 40/158 (25.32%), Postives = 85/158 (53.80%), Query Frame = 1
Query:   10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK-----TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALN 462
            +++ ++   +    +   F+ FG I S  ++ D  + + KGF FV++E  E+AQ A++++N +++  + + VG      + + +  +       FN ++V ++ +  +D+D+K +F  +G I S  + RD   GK K +GF+ +E    +  AV ++N
Sbjct:  136 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 293          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.508e-14
Identity = 40/158 (25.32%), Postives = 85/158 (53.80%), Query Frame = 1
Query:   10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK-----TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALN 462
            +++ ++   +    +   F+ FG I S  ++ D  + + KGF FV++E  E+AQ A++++N +++  + + VG      + + +  +       FN ++V ++ +  +D+D+K +F  +G I S  + RD   GK K +GF+ +E    +  AV ++N
Sbjct:  131 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 288          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PUF60_BOVIN (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.508e-14
Identity = 40/158 (25.32%), Postives = 85/158 (53.80%), Query Frame = 1
Query:   10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK-----TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALN 462
            +++ ++   +    +   F+ FG I S  ++ D  + + KGF FV++E  E+AQ A++++N +++  + + VG      + + +  +       FN ++V ++ +  +D+D+K +F  +G I S  + RD   GK K +GF+ +E    +  AV ++N
Sbjct:  102 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 259          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 8.508e-14
Identity = 47/159 (29.56%), Postives = 81/159 (50.94%), Query Frame = 1
Query:   10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 483
            +++ NLDK+I    L   F   G I + KI  D + ++  + FV++     A  A+  LNG  I +  V +    + Q+  +        N+FV +L+ +  DE L+  F ++ +  S  VM D   G S+ +GFV+F + DDA  A+D++ G+  + R
Sbjct:   77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSS----DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 231          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: GBP2_YEAST (Single-strand telomeric DNA-binding protein GBP2 OS=Saccharomyces cerevisiae GN=GBP2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.508e-14
Identity = 52/169 (30.77%), Postives = 81/169 (47.93%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH----------FLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 483
            +IF++NL      + L + F + G ++   I T   G  +G G V+F   ES Q+AI K +G L  D+++ V            F +K  RE +        VF+ NL  S   + LK +F E G +  A V  D +G S+ FG V +   D+  +A+D  NG + + R
Sbjct:  123 SIFVRNLTFDCTPEDLKELFGTVGEVVEADIITS-KGHHRGMGTVEFTKNESVQDAISKFDGALFMDRKLMVRQDNPPPEAAKEFSKKATREEI---DNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGR 287          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: LARK_DROME (RNA-binding protein lark OS=Drosophila melanogaster GN=lark PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.111e-13
Identity = 44/159 (27.67%), Postives = 77/159 (48.43%), Query Frame = 1
Query:    1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFD 477
            T  +FI NLD+      L   F  +G ++ C +        K +GFV  E ++  ++AI  LNG  +N+  + V     +  +   A  T    +FV NL + T   +++++F +YGT+    ++R+       +GFV+ + V D   A+  LNG+  D
Sbjct:    6 TFKLFIGNLDEKTQATELRALFEKYGTVVECDVV-------KNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKV-----EAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRN-------YGFVHLDCVGDVQDAIKELNGRVVD 145          
The following BLAST results are available for this feature:
BLAST of FE659327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
ELAV_DROME6.515e-1429.59Protein elav OS=Drosophila melanogaster GN=elav PE... [more]
ROC1_NICPL8.508e-1428.5730 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
PUF60_RAT8.508e-1425.32Poly(U)-binding-splicing factor PUF60 OS=Rattus no... [more]
PUF60_PONAB8.508e-1425.32Poly(U)-binding-splicing factor PUF60 OS=Pongo abe... [more]
PUF60_MOUSE8.508e-1425.32Poly(U)-binding-splicing factor PUF60 OS=Mus muscu... [more]
PUF60_HUMAN8.508e-1425.32Poly(U)-binding-splicing factor PUF60 OS=Homo sapi... [more]
PUF60_BOVIN8.508e-1425.32Poly(U)-binding-splicing factor PUF60 OS=Bos tauru... [more]
PUB1_YEAST8.508e-1429.56Nuclear and cytoplasmic polyadenylated RNA-binding... [more]
GBP2_YEAST8.508e-1430.77Single-strand telomeric DNA-binding protein GBP2 O... [more]
LARK_DROME1.111e-1327.67RNA-binding protein lark OS=Drosophila melanogaste... [more]

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Properties
Property NameValue
Genbank descriptionA141 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659327 ID=FE659327; Name=FE659327; organism=Citrus sinensis; type=EST; length=489bp
ACTGGGAACATATTTATCAAGAATTTGGACAAGTCTATTGATCACAAAGC
ATTACACGATACATTTTCTTCATTCGGAAACATTCTTTCTTGTAAGATAG
CTACTGATGGTTCTGGCCAGTCCAAAGGTTTCGGTTTTGTGCAATTTGAG
AACAAAGAATCTGCTCAAAATGCTATTGATAAGTTAAATGGCATGCTTAT
TAATGATAAACAAGTGTTCGTTGGGCACTTTCTTCGTAAGCAGGAAAGAG
AAACTGTAGCAATTAAAACAAAATTCAATAACGTATTTGTCAAAAACCTT
GATGAGTCAACTACAGATGAAGATTTGAAGAAAATTTTTGGTGAGTATGG
AACAATTACCAGTGCAGTAGTGATGAGGGATGGAGATGGAAAATCCAAGT
GTTTTGGATTTGTGAATTTTGAAAATGTAGATGATGCTGCCAAAGCTGTT
GATGCTCTTAATGGAAAGAAATTTGATGACAGAGAATGG
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