FE659327
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELAV_DROME (Protein elav OS=Drosophila melanogaster GN=elav PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 6.515e-14 Identity = 50/169 (29.59%), Postives = 90/169 (53.25%), Query Frame = 1 Query: 7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS--------------GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD--GDGKSKCFGFVNFENVDDAAKAVDALNG 465 N+ + L +++ + FSS G I S K+ D S GQS G+GFV + + A+ A++ LNG+ + +K + V F R + AIK N++V L ++ T ++L+ IF +G I ++ ++++ D ++K GF+ F+ ++A +A+ ALNG Sbjct: 150 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVS-FARP---SSDAIKGA--NLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 8.508e-14 Identity = 50/175 (28.57%), Postives = 86/175 (49.14%), Query Frame = 1 Query: 10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK---------------TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 483 IF+ NL S D AL + F GN+ ++ D +G+S+GFGFV +KE + A + NG ++ + + V ++RE + + N V+V NL + L+ +F E G + A V+ D D G+S+ FGFV + + ++ A+++L+G + R Sbjct: 89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGR 263
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 8.508e-14 Identity = 40/158 (25.32%), Postives = 85/158 (53.80%), Query Frame = 1 Query: 10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK-----TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALN 462 +++ ++ + + F+ FG I S ++ D + + KGF FV++E E+AQ A++++N +++ + + VG + + + + FN ++V ++ + +D+D+K +F +G I S + RD GK K +GF+ +E + AV ++N Sbjct: 136 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 293
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 8.508e-14 Identity = 40/158 (25.32%), Postives = 85/158 (53.80%), Query Frame = 1 Query: 10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK-----TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALN 462 +++ ++ + + F+ FG I S ++ D + + KGF FV++E E+AQ A++++N +++ + + VG + + + + FN ++V ++ + +D+D+K +F +G I S + RD GK K +GF+ +E + AV ++N Sbjct: 130 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 287
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 8.508e-14 Identity = 40/158 (25.32%), Postives = 85/158 (53.80%), Query Frame = 1 Query: 10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK-----TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALN 462 +++ ++ + + F+ FG I S ++ D + + KGF FV++E E+AQ A++++N +++ + + VG + + + + FN ++V ++ + +D+D+K +F +G I S + RD GK K +GF+ +E + AV ++N Sbjct: 136 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 293
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 8.508e-14 Identity = 40/158 (25.32%), Postives = 85/158 (53.80%), Query Frame = 1 Query: 10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK-----TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALN 462 +++ ++ + + F+ FG I S ++ D + + KGF FV++E E+AQ A++++N +++ + + VG + + + + FN ++V ++ + +D+D+K +F +G I S + RD GK K +GF+ +E + AV ++N Sbjct: 131 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 288
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PUF60_BOVIN (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 8.508e-14 Identity = 40/158 (25.32%), Postives = 85/158 (53.80%), Query Frame = 1 Query: 10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK-----TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALN 462 +++ ++ + + F+ FG I S ++ D + + KGF FV++E E+AQ A++++N +++ + + VG + + + + FN ++V ++ + +D+D+K +F +G I S + RD GK K +GF+ +E + AV ++N Sbjct: 102 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 259
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3) HSP 1 Score: 76.2554 bits (186), Expect = 8.508e-14 Identity = 47/159 (29.56%), Postives = 81/159 (50.94%), Query Frame = 1 Query: 10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 483 +++ NLDK+I L F G I + KI D + ++ + FV++ A A+ LNG I + V + + Q+ + N+FV +L+ + DE L+ F ++ + S VM D G S+ +GFV+F + DDA A+D++ G+ + R Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSS----DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 231
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: GBP2_YEAST (Single-strand telomeric DNA-binding protein GBP2 OS=Saccharomyces cerevisiae GN=GBP2 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 8.508e-14 Identity = 52/169 (30.77%), Postives = 81/169 (47.93%), Query Frame = 1 Query: 7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH----------FLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 483 +IF++NL + L + F + G ++ I T G +G G V+F ES Q+AI K +G L D+++ V F +K RE + VF+ NL S + LK +F E G + A V D +G S+ FG V + D+ +A+D NG + + R Sbjct: 123 SIFVRNLTFDCTPEDLKELFGTVGEVVEADIITS-KGHHRGMGTVEFTKNESVQDAISKFDGALFMDRKLMVRQDNPPPEAAKEFSKKATREEI---DNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGR 287
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: LARK_DROME (RNA-binding protein lark OS=Drosophila melanogaster GN=lark PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.111e-13 Identity = 44/159 (27.67%), Postives = 77/159 (48.43%), Query Frame = 1 Query: 1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFD 477 T +FI NLD+ L F +G ++ C + K +GFV E ++ ++AI LNG +N+ + V + + A T +FV NL + T +++++F +YGT+ ++R+ +GFV+ + V D A+ LNG+ D Sbjct: 6 TFKLFIGNLDEKTQATELRALFEKYGTVVECDVV-------KNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKV-----EAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRN-------YGFVHLDCVGDVQDAIKELNGRVVD 145 The following BLAST results are available for this feature:
BLAST of FE659327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 150
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Sequences
The
following sequences are available for this feature:
EST sequence >FE659327 ID=FE659327; Name=FE659327; organism=Citrus sinensis; type=EST; length=489bpback to top |