FE659327

Overview
NameFE659327
Unique NameFE659327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.111e-13
Identity = 46/157 (29.30%), Postives = 82/157 (52.23%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471
            N+ +  L +++    L   FSS G + S K+  D  +G S G+GFV + N + A+ AI+ LNG+ +  K + V     +   ET+    K  N+++  L  + T +D++ +F  +G  I S V++    G S+   F+ F+   +A +A+ + NG K
Sbjct:   21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVS--FARPSSETI----KDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHK 171          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELAV4_XENTR (ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.111e-13
Identity = 48/186 (25.81%), Postives = 87/186 (46.77%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD------------------------------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471
            N+ +  L +++  +     F S G I SCK+  D                              G GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L+++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEEHFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 231          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELAV4_XENLA (ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.111e-13
Identity = 48/186 (25.81%), Postives = 87/186 (46.77%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD------------------------------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471
            N+ +  L +++  +     F S G I SCK+  D                              G GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L+++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEENFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 231          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: MRD1_YEAST (Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces cerevisiae GN=MRD1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.451e-13
Identity = 52/165 (31.52%), Postives = 83/165 (50.30%), Query Frame = 1
Query:    1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT------DGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN----VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 465
            T +IFIKNL+ S  ++ L D F  F   +  ++ T       G   S GFGFV+F  KE A   I  ++G +I+  ++ +     +Q  ++   KTK N     + VKNL    T +D+ ++F  +G + S  V +  D  ++ F FV F    +A  A+D L+G
Sbjct:  662 TVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQL-KLSHRQASQSGNTKTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLHG 825          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: HRB1_YEAST (Protein HRB1 OS=Saccharomyces cerevisiae GN=HRB1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.476e-13
Identity = 50/165 (30.30%), Postives = 81/165 (49.09%), Query Frame = 1
Query:    1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV-------GHFLRKQ---ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 465
            + +IF+ NL      + L + FS  G ++   I T   G  +G G V+F N +    AI + +G    D+++FV        + ++++   +R  +    K + V VKNL  S   + LK IF E G +  A V  DGDG S   G V+F ++ D  +A++  NG
Sbjct:  160 SNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITS-RGHHRGMGTVEFTNSDDVDRAIRQYDGAFFMDRKIFVRQDNPPPSNNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIEKYNG 323          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.476e-13
Identity = 45/157 (28.66%), Postives = 83/157 (52.87%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471
            N+ +  L +++    L   FSS G + S K+  D  +G S G+GFV + N + A+ AI+ LNG+ +  K + V   + +   E++    K  N+++  L  + T +D++ +F  +G  I S V++    G S+   F+ F+   +A +A+ + NG K
Sbjct:   21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVS--VARPSSESI----KDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHK 171          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.233e-13
Identity = 50/169 (29.59%), Postives = 82/169 (48.52%), Query Frame = 1
Query:   10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL-----RKQERETVAIKTKFN----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            +++ NL + +    +   FS  G   +CK+  D +G    + FV+F     A  A+  +NG  I  K+V V         +K    +  + T+ +    +VFV +L    T ED+K  F  +G I+ A V++D   GKSK +GFV+F N  DA  A+  + G+    R+
Sbjct:    9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 176          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 3.233e-13
Identity = 50/169 (29.59%), Postives = 82/169 (48.52%), Query Frame = 1
Query:   10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL-----RKQERETVAIKTKFN----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486
            +++ NL + +    +   FS  G   +CK+  D +G    + FV+F     A  A+  +NG  I  K+V V         +K    +  + T+ +    +VFV +L    T ED+K  F  +G I+ A V++D   GKSK +GFV+F N  DA  A+  + G+    R+
Sbjct:    9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 176          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: RBM28_HUMAN (RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 3.233e-13
Identity = 50/177 (28.25%), Postives = 84/177 (47.46%), Query Frame = 1
Query:   10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLN---GMLIN-----------DKQVFVGHFLRKQERETVAIKTKFNN----VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 483
            +F+  L  S   + L + FS  G +  C + T+ GS   +GFG+V F   E  Q A+ ++    G  IN            K+          ++E  A K K  +    + ++NL    +++DLK +F ++G +    + R  DGK + FGFV F+N+ +A KA+  +N K+   R
Sbjct:    6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGR 182          
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.233e-13
Identity = 44/157 (28.03%), Postives = 79/157 (50.32%), Query Frame = 1
Query:    7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471
            N+ +  L +++    L   FSS G + S K+  D  +G S G+GFV +   + A+ AI+ LNG+ +  K + V +     E        K  N+++  L  + T +D++ +F  +G  I S V++    G S+   F+ F+   +A +A+ + NG K
Sbjct:   21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE------VIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171          
The following BLAST results are available for this feature:
BLAST of FE659327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
ELV1B_XENLA1.111e-1329.30ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-... [more]
ELAV4_XENTR1.111e-1325.81ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl... [more]
ELAV4_XENLA1.111e-1325.81ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE... [more]
MRD1_YEAST1.451e-1331.52Multiple RNA-binding domain-containing protein 1 O... [more]
HRB1_YEAST2.476e-1330.30Protein HRB1 OS=Saccharomyces cerevisiae GN=HRB1 P... [more]
ELAV1_XENTR2.476e-1328.66ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl... [more]
TIA1_MOUSE3.233e-1329.59Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
TIA1_HUMAN3.233e-1329.59Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
RBM28_HUMAN3.233e-1328.25RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE... [more]
ELAV1_HUMAN3.233e-1328.03ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionA141 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659327 ID=FE659327; Name=FE659327; organism=Citrus sinensis; type=EST; length=489bp
ACTGGGAACATATTTATCAAGAATTTGGACAAGTCTATTGATCACAAAGC
ATTACACGATACATTTTCTTCATTCGGAAACATTCTTTCTTGTAAGATAG
CTACTGATGGTTCTGGCCAGTCCAAAGGTTTCGGTTTTGTGCAATTTGAG
AACAAAGAATCTGCTCAAAATGCTATTGATAAGTTAAATGGCATGCTTAT
TAATGATAAACAAGTGTTCGTTGGGCACTTTCTTCGTAAGCAGGAAAGAG
AAACTGTAGCAATTAAAACAAAATTCAATAACGTATTTGTCAAAAACCTT
GATGAGTCAACTACAGATGAAGATTTGAAGAAAATTTTTGGTGAGTATGG
AACAATTACCAGTGCAGTAGTGATGAGGGATGGAGATGGAAAATCCAAGT
GTTTTGGATTTGTGAATTTTGAAAATGTAGATGATGCTGCCAAAGCTGTT
GATGCTCTTAATGGAAAGAAATTTGATGACAGAGAATGG
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