FE659327
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.111e-13 Identity = 46/157 (29.30%), Postives = 82/157 (52.23%), Query Frame = 1 Query: 7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471 N+ + L +++ L FSS G + S K+ D +G S G+GFV + N + A+ AI+ LNG+ + K + V + ET+ K N+++ L + T +D++ +F +G I S V++ G S+ F+ F+ +A +A+ + NG K Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVS--FARPSSETI----KDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHK 171
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELAV4_XENTR (ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.111e-13 Identity = 48/186 (25.81%), Postives = 87/186 (46.77%), Query Frame = 1 Query: 7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD------------------------------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471 N+ + L +++ + F S G I SCK+ D G GQS G+GFV + + + A+ AI+ LNG+ + K + V + + + N++V L ++ T ++L+++F +YG ITS +++ G S+ GF+ F+ +A +A+ LNG+K Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEEHFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 231
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELAV4_XENLA (ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.111e-13 Identity = 48/186 (25.81%), Postives = 87/186 (46.77%), Query Frame = 1 Query: 7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD------------------------------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471 N+ + L +++ + F S G I SCK+ D G GQS G+GFV + + + A+ AI+ LNG+ + K + V + + + N++V L ++ T ++L+++F +YG ITS +++ G S+ GF+ F+ +A +A+ LNG+K Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEENFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 231
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: MRD1_YEAST (Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces cerevisiae GN=MRD1 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.451e-13 Identity = 52/165 (31.52%), Postives = 83/165 (50.30%), Query Frame = 1 Query: 1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT------DGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN----VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 465 T +IFIKNL+ S ++ L D F F + ++ T G S GFGFV+F KE A I ++G +I+ ++ + +Q ++ KTK N + VKNL T +D+ ++F +G + S V + D ++ F FV F +A A+D L+G Sbjct: 662 TVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQL-KLSHRQASQSGNTKTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLHG 825
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: HRB1_YEAST (Protein HRB1 OS=Saccharomyces cerevisiae GN=HRB1 PE=1 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 2.476e-13 Identity = 50/165 (30.30%), Postives = 81/165 (49.09%), Query Frame = 1 Query: 1 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV-------GHFLRKQ---ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 465 + +IF+ NL + L + FS G ++ I T G +G G V+F N + AI + +G D+++FV + ++++ +R + K + V VKNL S + LK IF E G + A V DGDG S G V+F ++ D +A++ NG Sbjct: 160 SNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITS-RGHHRGMGTVEFTNSDDVDRAIRQYDGAFFMDRKIFVRQDNPPPSNNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIEKYNG 323
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 2.476e-13 Identity = 45/157 (28.66%), Postives = 83/157 (52.87%), Query Frame = 1 Query: 7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471 N+ + L +++ L FSS G + S K+ D +G S G+GFV + N + A+ AI+ LNG+ + K + V + + E++ K N+++ L + T +D++ +F +G I S V++ G S+ F+ F+ +A +A+ + NG K Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVS--VARPSSESI----KDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHK 171
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 3.233e-13 Identity = 50/169 (29.59%), Postives = 82/169 (48.52%), Query Frame = 1 Query: 10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL-----RKQERETVAIKTKFN----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486 +++ NL + + + FS G +CK+ D +G + FV+F A A+ +NG I K+V V +K + + T+ + +VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+ Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 176
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 74.3294 bits (181), Expect = 3.233e-13 Identity = 50/169 (29.59%), Postives = 82/169 (48.52%), Query Frame = 1 Query: 10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL-----RKQERETVAIKTKFN----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE 486 +++ NL + + + FS G +CK+ D +G + FV+F A A+ +NG I K+V V +K + + T+ + +VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+ Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 176
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: RBM28_HUMAN (RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3) HSP 1 Score: 74.3294 bits (181), Expect = 3.233e-13 Identity = 50/177 (28.25%), Postives = 84/177 (47.46%), Query Frame = 1 Query: 10 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLN---GMLIN-----------DKQVFVGHFLRKQERETVAIKTKFNN----VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 483 +F+ L S + L + FS G + C + T+ GS +GFG+V F E Q A+ ++ G IN K+ ++E A K K + + ++NL +++DLK +F ++G + + R DGK + FGFV F+N+ +A KA+ +N K+ R Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGR 182
BLAST of FE659327 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 3.233e-13 Identity = 44/157 (28.03%), Postives = 79/157 (50.32%), Query Frame = 1 Query: 7 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 471 N+ + L +++ L FSS G + S K+ D +G S G+GFV + + A+ AI+ LNG+ + K + V + E K N+++ L + T +D++ +F +G I S V++ G S+ F+ F+ +A +A+ + NG K Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE------VIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171 The following BLAST results are available for this feature:
BLAST of FE659327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 150
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FE659327 ID=FE659327; Name=FE659327; organism=Citrus sinensis; type=EST; length=489bpback to top |