FE659325

Overview
NameFE659325
Unique NameFE659325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length498
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE659325 vs. ExPASy Swiss-Prot
Match: ACT8_ARATH (Actin-8 OS=Arabidopsis thaliana GN=ACT8 PE=1 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 2.482e-72
Identity = 126/134 (94.03%), Postives = 131/134 (97.76%), Query Frame = 1
Query:   97 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAM 498
            MADA+DIQP+VCDNGTGMVKAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKDAYVGDEAQSKRGILTLKYPIEHG+VSNWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKANREKMTQIMFETFN PAM
Sbjct:    1 MADADDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAM 134          
BLAST of FE659325 vs. ExPASy Swiss-Prot
Match: ACT6_SOLTU (Actin-71 OS=Solanum tuberosum GN=AC71 PE=3 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 5.529e-72
Identity = 128/134 (95.52%), Postives = 129/134 (96.27%), Query Frame = 1
Query:   97 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAM 498
            MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDAYV DEAQSKRGILTLKYP EHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAM
Sbjct:    1 MADVEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHAGVMVGMGQKDAYVVDEAQSKRGILTLKYPXEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAM 134          
BLAST of FE659325 vs. ExPASy Swiss-Prot
Match: ACT7_ORYSJ (Actin-7 OS=Oryza sativa subsp. japonica GN=ACT7 PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 7.222e-72
Identity = 126/130 (96.92%), Postives = 129/130 (99.23%), Query Frame = 1
Query:  109 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAM 498
            EDIQP+VCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPKANREKMTQIMFETFN PAM
Sbjct:    4 EDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANREKMTQIMFETFNCPAM 133          
BLAST of FE659325 vs. ExPASy Swiss-Prot
Match: ACT7_ORYSI (Actin-7 OS=Oryza sativa subsp. indica GN=ACT7 PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 7.222e-72
Identity = 126/130 (96.92%), Postives = 129/130 (99.23%), Query Frame = 1
Query:  109 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAM 498
            EDIQP+VCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPKANREKMTQIMFETFN PAM
Sbjct:    4 EDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANREKMTQIMFETFNCPAM 133          
BLAST of FE659325 vs. ExPASy Swiss-Prot
Match: ACT2_ARATH (Actin-2 OS=Arabidopsis thaliana GN=ACT2 PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 7.222e-72
Identity = 125/134 (93.28%), Postives = 131/134 (97.76%), Query Frame = 1
Query:   97 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAM 498
            MA+A+DIQP+VCDNGTGMVKAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKDAYVGDEAQSKRGILTLKYPIEHG+VSNWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKANREKMTQIMFETFN PAM
Sbjct:    1 MAEADDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAM 134          
BLAST of FE659325 vs. ExPASy Swiss-Prot
Match: ACT7_SOLTU (Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 6.114e-71
Identity = 125/130 (96.15%), Postives = 128/130 (98.46%), Query Frame = 1
Query:   97 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 486
            MAD +DIQPLVCDNGTGMVKAGFAGDD+PRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILT KYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN
Sbjct:    1 MADVDDIQPLVCDNGTGMVKAGFAGDDSPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTWKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 130          
BLAST of FE659325 vs. ExPASy Swiss-Prot
Match: ACT1_DAUCA (Actin-1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 6.114e-71
Identity = 127/134 (94.78%), Postives = 130/134 (97.01%), Query Frame = 1
Query:   97 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAM 498
            MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI+TLKYPIEHGIVSNWDDM +IWHHTFYNELR +PEEHPVLLTEAPLNPKANREKMTQIM ETFNVPAM
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGIITLKYPIEHGIVSNWDDM-RIWHHTFYNELRASPEEHPVLLTEAPLNPKANREKMTQIMIETFNVPAM 133          
BLAST of FE659325 vs. ExPASy Swiss-Prot
Match: ACT_COLSC (Actin OS=Coleochaete scutata PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 7.985e-71
Identity = 125/134 (93.28%), Postives = 130/134 (97.01%), Query Frame = 1
Query:   97 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAM 498
            MAD E++  LVCDNG+GMVKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF+VPAM
Sbjct:    1 MADGEEVSALVCDNGSGMVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFSVPAM 134          
BLAST of FE659325 vs. ExPASy Swiss-Prot
Match: ACT2_DAUCA (Actin-2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 1.362e-70
Identity = 132/136 (97.06%), Postives = 132/136 (97.06%), Query Frame = 1
Query:   97 MADA-EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIV-GRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAM 498
            MAD  EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIV GRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKI HHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAM
Sbjct:    1 MADGGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKISHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAM 136          
BLAST of FE659325 vs. ExPASy Swiss-Prot
Match: ACT_MESVI (Actin OS=Mesostigma viride PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 3.963e-70
Identity = 124/134 (92.54%), Postives = 129/134 (96.27%), Query Frame = 1
Query:   97 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAM 498
            MAD  ++  L+CDNG+GMVKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAM
Sbjct:    1 MADEGEVSALMCDNGSGMVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAM 134          
The following BLAST results are available for this feature:
BLAST of FE659325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
ACT8_ARATH2.482e-7294.03Actin-8 OS=Arabidopsis thaliana GN=ACT8 PE=1 SV=2[more]
ACT6_SOLTU5.529e-7295.52Actin-71 OS=Solanum tuberosum GN=AC71 PE=3 SV=2[more]
ACT7_ORYSJ7.222e-7296.92Actin-7 OS=Oryza sativa subsp. japonica GN=ACT7 PE... [more]
ACT7_ORYSI7.222e-7296.92Actin-7 OS=Oryza sativa subsp. indica GN=ACT7 PE=3... [more]
ACT2_ARATH7.222e-7293.28Actin-2 OS=Arabidopsis thaliana GN=ACT2 PE=1 SV=1[more]
ACT7_SOLTU6.114e-7196.15Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1[more]
ACT1_DAUCA6.114e-7194.78Actin-1 OS=Daucus carota PE=2 SV=1[more]
ACT_COLSC7.985e-7193.28Actin OS=Coleochaete scutata PE=2 SV=1[more]
ACT2_DAUCA1.362e-7097.06Actin-2 OS=Daucus carota PE=2 SV=1[more]
ACT_MESVI3.963e-7092.54Actin OS=Mesostigma viride PE=3 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionA89 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659325 ID=FE659325; Name=FE659325; organism=Citrus sinensis; type=EST; length=498bp
ACCAAATACAGAGCGATAGAGAGAATCGACACTCTCAGCTAGACTCCATC
TTCGAATTTTTCTCTCGTCGTCTCTTCAATCTAACTTTTATAAAAAATGG
CCGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACCGGAATG
GTGAAGGCTGGATTTGCTGGAGATGATGCTCCGAGGGCAGTATTCCCTAG
TATTGTTGGTAGGCCTCGACACACTGGAGTCATGGTTGGAATGGGGCAGA
AGGATGCCTATGTTGGTGATGAGGCCCAATCGAAAAGAGGTATTCTTACT
TTGAAATACCCAATTGAGCACGGTATTGTAAGCAACTGGGATGATATGGA
AAAGATCTGGCATCATACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAG
AGCACCCAGTGCTTCTCACTGAGGCACCTCTTAACCCCAAGGCCAACAGA
GAGAAGATGACCCAAATTATGTTTGAAACTTTCAATGTGCCAGCCATG
back to top