FE659220

Overview
NameFE659220
Unique NameFE659220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS22B_YEAST (40S ribosomal protein S22-B OS=Saccharomyces cerevisiae GN=RPS22B PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 1.863e-17
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+
Sbjct:   70 NKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKH 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS22A_YEAST (40S ribosomal protein S22-A OS=Saccharomyces cerevisiae GN=RPS22A PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.863e-17
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+
Sbjct:   70 NKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKH 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS15B_DROME (40S ribosomal protein S15Ab OS=Drosophila melanogaster GN=RpS15Ab PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 4.149e-17
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRFD  + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK+
Sbjct:   70 NKCGVISPRFDAPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKH 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS15A_RAT (40S ribosomal protein S15a OS=Rattus norvegicus GN=Rps15a PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.149e-17
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRFDV +K++E W   LLPSRQFG+IVLTTSAGIMDHEEARRK+
Sbjct:   70 NKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS15A_MOUSE (40S ribosomal protein S15a OS=Mus musculus GN=Rps15a PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.149e-17
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRFDV +K++E W   LLPSRQFG+IVLTTSAGIMDHEEARRK+
Sbjct:   70 NKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS15A_ICTPU (40S ribosomal protein S15a OS=Ictalurus punctatus GN=rps15a PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 4.149e-17
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRFDV +K++E W   LLPSRQFG+IVLTTSAGIMDHEEARRK+
Sbjct:   70 NKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS15A_HUMAN (40S ribosomal protein S15a OS=Homo sapiens GN=RPS15A PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.149e-17
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRFDV +K++E W   LLPSRQFG+IVLTTSAGIMDHEEARRK+
Sbjct:   70 NKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS15A_BOVIN (40S ribosomal protein S15a OS=Bos taurus GN=RPS15A PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.149e-17
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRFDV +K++E W   LLPSRQFG+IVLTTSAGIMDHEEARRK+
Sbjct:   70 NKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS22_KLUMA (40S ribosomal protein S22 OS=Kluyveromyces marxianus GN=RPS22 PE=3 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 5.419e-17
Identity = 37/51 (72.55%), Postives = 46/51 (90.20%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRF+V + ++E WTA LLP+RQFGY++LTTSAGIMDHEEA RK+
Sbjct:   70 NKCGVISPRFNVKISDVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKH 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS22_ASHGO (40S ribosomal protein S22 OS=Ashbya gossypii GN=RPS22A PE=3 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 5.419e-17
Identity = 37/51 (72.55%), Postives = 46/51 (90.20%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRF+V + ++E WTA LLP+RQFGY++LTTSAGIMDHEEA RK+
Sbjct:   70 NKCGVISPRFNVKINDVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKH 120          
The following BLAST results are available for this feature:
BLAST of FE659220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RS22B_YEAST1.863e-1776.4740S ribosomal protein S22-B OS=Saccharomyces cerev... [more]
RS22A_YEAST1.863e-1776.4740S ribosomal protein S22-A OS=Saccharomyces cerev... [more]
RS15B_DROME4.149e-1776.4740S ribosomal protein S15Ab OS=Drosophila melanoga... [more]
RS15A_RAT4.149e-1778.4340S ribosomal protein S15a OS=Rattus norvegicus GN... [more]
RS15A_MOUSE4.149e-1778.4340S ribosomal protein S15a OS=Mus musculus GN=Rps1... [more]
RS15A_ICTPU4.149e-1778.4340S ribosomal protein S15a OS=Ictalurus punctatus ... [more]
RS15A_HUMAN4.149e-1778.4340S ribosomal protein S15a OS=Homo sapiens GN=RPS1... [more]
RS15A_BOVIN4.149e-1778.4340S ribosomal protein S15a OS=Bos taurus GN=RPS15A... [more]
RS22_KLUMA5.419e-1772.5540S ribosomal protein S22 OS=Kluyveromyces marxian... [more]
RS22_ASHGO5.419e-1772.5540S ribosomal protein S22 OS=Ashbya gossypii GN=RP... [more]

Pages

back to top
Properties
Property NameValue
Genbank description184 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659220 ID=FE659220; Name=FE659220; organism=Citrus sinensis; type=EST; length=229bp
ACACAAAAAAAACTCAAGTCCCATTCTCAATATGAACTTTGCCTAGTAGA
AAAAAACCAAGCACTTTACCACCAACATTCTTCCTTCTCGCCTCTTCGTG
GTCCATAATGCCAGCAGAAGTTGTCAGCACAATGTATCCAAACTGTCTTG
AGGGAAGCAACCTAGCAGTCCAACCTTCAATCTCCTTGACGCCAACATCA
AAACGGGGACTGATAACCCCACATTTGCT
back to top