FE659220

Overview
NameFE659220
Unique NameFE659220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS22_KLULA (40S ribosomal protein S22 OS=Kluyveromyces lactis GN=RPS22 PE=3 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 7.078e-17
Identity = 37/51 (72.55%), Postives = 46/51 (90.20%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRF+V + ++E WTA LLP+RQFGY++LTTSAGIMDHEEA RK+
Sbjct:   70 NKCGVISPRFNVKIADVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKH 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS15A_PONAB (40S ribosomal protein S15a OS=Pongo abelii GN=RPS15A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.207e-16
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRFDV +K++E W   L PSRQFG+IVLTTSAGIMDHEEARRK+
Sbjct:   70 NKCGVISPRFDVQLKDLEKWQNNLFPSRQFGFIVLTTSAGIMDHEEARRKH 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS22_CANAL (40S ribosomal protein S22 OS=Candida albicans GN=RPS22A PE=3 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 1.577e-16
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVI PRF+V + +IE WT  LLP+RQFGY++LTTSAGIMDHEEARRK+
Sbjct:   70 NKCGVIQPRFNVKINDIERWTDNLLPARQFGYVILTTSAGIMDHEEARRKH 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS22_NEUCR (40S ribosomal protein S22 OS=Neurospora crassa GN=rps-22 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.690e-16
Identity = 36/51 (70.59%), Postives = 46/51 (90.20%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPR++V + E+E W  +LLP+RQFGY++LTTSAGIMDHEEARRK+
Sbjct:   70 NKCGVISPRYNVRLAELEKWVVKLLPARQFGYVILTTSAGIMDHEEARRKH 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS15A_DICDI (40S ribosomal protein S15a OS=Dictyostelium discoideum GN=rps15a PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.476e-14
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRFDV + EIE W + LLPSRQFG+IVLTTS GIMDH EA+ ++
Sbjct:   70 NKCGVISPRFDVTLDEIEKWASYLLPSRQFGHIVLTTSLGIMDHNEAKTRH 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS22_SCHPO (40S ribosomal protein S22 OS=Schizosaccharomyces pombe GN=rps22a PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.635e-13
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +KCGVISPRF+V +K+IE W  +LLPSRQ G IVLTTS GIM H EAR K+
Sbjct:   70 NKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKD 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS22_AGABI (40S ribosomal protein S22 OS=Agaricus bisporus GN=rps22 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.249e-12
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = -1
Query:   77 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 229
            +K GVISPRF+V    IE W   LLPSR  G IVLTTS+GI+DHEEARRKN
Sbjct:   70 NKTGVISPRFNVQHNRIEQWINYLLPSRGIGIIVLTTSSGILDHEEARRKN 120          
BLAST of FE659220 vs. ExPASy Swiss-Prot
Match: RS8_METLZ (30S ribosomal protein S8P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps8p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.605e-11
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = -1
Query:   83 SKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARR 229
            +KCGVI+PRF V V+++E W  R LP + FG I+LTTS G+M HE+AR+
Sbjct:   70 NKCGVITPRFSVKVEDLESWEIRYLPGKGFGIIILTTSKGVMSHEQARK 118          
The following BLAST results are available for this feature:
BLAST of FE659220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RS22_KLULA7.078e-1772.5540S ribosomal protein S22 OS=Kluyveromyces lactis ... [more]
RS15A_PONAB1.207e-1676.4740S ribosomal protein S15a OS=Pongo abelii GN=RPS1... [more]
RS22_CANAL1.577e-1672.5540S ribosomal protein S22 OS=Candida albicans GN=R... [more]
RS22_NEUCR2.690e-1670.5940S ribosomal protein S22 OS=Neurospora crassa GN=... [more]
RS15A_DICDI1.476e-1470.5940S ribosomal protein S15a OS=Dictyostelium discoi... [more]
RS22_SCHPO3.635e-1368.6340S ribosomal protein S22 OS=Schizosaccharomyces p... [more]
RS22_AGABI5.249e-1268.6340S ribosomal protein S22 OS=Agaricus bisporus GN=... [more]
RS8_METLZ2.605e-1157.1430S ribosomal protein S8P OS=Methanocorpusculum la... [more]

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Properties
Property NameValue
Genbank description184 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659220 ID=FE659220; Name=FE659220; organism=Citrus sinensis; type=EST; length=229bp
ACACAAAAAAAACTCAAGTCCCATTCTCAATATGAACTTTGCCTAGTAGA
AAAAAACCAAGCACTTTACCACCAACATTCTTCCTTCTCGCCTCTTCGTG
GTCCATAATGCCAGCAGAAGTTGTCAGCACAATGTATCCAAACTGTCTTG
AGGGAAGCAACCTAGCAGTCCAACCTTCAATCTCCTTGACGCCAACATCA
AAACGGGGACTGATAACCCCACATTTGCT
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