FE659184

Overview
NameFE659184
Unique NameFE659184
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length178
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE659184 vs. ExPASy Swiss-Prot
Match: CYC_CHLRE (Cytochrome c OS=Chlamydomonas reinhardtii GN=CYC1 PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.104e-17
Identity = 39/54 (72.22%), Postives = 42/54 (77.78%), Query Frame = -1
Query:    2 MASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPG 163
            M++F EAP G+   GEKIFKTKCAQCH  EKG GHKQGPNL GLFGR SGT  G
Sbjct:    1 MSTFAEAPAGDLARGEKIFKTKCAQCHVAEKGGGHKQGPNLGGLFGRVSGTAAG 54          
BLAST of FE659184 vs. ExPASy Swiss-Prot
Match: CYC_ENTIN (Cytochrome c OS=Enteromorpha intestinalis PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.179e-16
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = -1
Query:    2 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPG 160
            ++F +APPG+   G KIFK KCA+CHTV+ GAGHKQGPNLNG FGR SGT  G
Sbjct:    1 STFABAPPGBPAKGAKIFKAKCAZCHTVBAGAGHKQGPNLNGAFGRTSGTAAG 53          
BLAST of FE659184 vs. ExPASy Swiss-Prot
Match: CYC2_MOUSE (Cytochrome c, testis-specific OS=Mus musculus GN=Cyct PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 7.911e-13
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = -1
Query:    2 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPG 136
            G+A+AG+KIF  KCAQCHTVEKG  HK GPNL GLFGR++G  PG
Sbjct:    2 GDAEAGKKIFVQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPG 46          
BLAST of FE659184 vs. ExPASy Swiss-Prot
Match: CYC_MACGI (Cytochrome c OS=Macropus giganteus GN=CYCS PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = -1
Query:    2 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPG 136
            G+ + G+KIF  KCAQCHTVEKG  HK GPNLNG+FGR++G  PG
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLNGIFGRKTGQAPG 46          
BLAST of FE659184 vs. ExPASy Swiss-Prot
Match: CYC2_RAT (Cytochrome c, testis-specific OS=Rattus norvegicus GN=Cyct PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = -1
Query:    2 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPG 136
            G+A+AG+KIF  KCAQCHTVEKG  HK GPNL GLFGR++G  PG
Sbjct:    2 GDAEAGKKIFIQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPG 46          
BLAST of FE659184 vs. ExPASy Swiss-Prot
Match: CYC_HIPAM (Cytochrome c OS=Hippopotamus amphibius GN=CYCS PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.762e-12
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = -1
Query:    2 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPG 136
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G +PG
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQSPG 46          
BLAST of FE659184 vs. ExPASy Swiss-Prot
Match: CYC_SHEEP (Cytochrome c OS=Ovis aries GN=CYCS PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.302e-12
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = -1
Query:    2 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPG 136
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPG 46          
BLAST of FE659184 vs. ExPASy Swiss-Prot
Match: CYC_PIG (Cytochrome c OS=Sus scrofa GN=CYCS PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.302e-12
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = -1
Query:    2 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPG 136
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPG 46          
BLAST of FE659184 vs. ExPASy Swiss-Prot
Match: CYC_MIRLE (Cytochrome c OS=Mirounga leonina GN=CYCS PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.302e-12
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = -1
Query:    2 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPG 136
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPG 46          
BLAST of FE659184 vs. ExPASy Swiss-Prot
Match: CYC_MINSC (Cytochrome c OS=Miniopterus schreibersi GN=CYCS PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.302e-12
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = -1
Query:    2 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPG 136
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPG 46          
The following BLAST results are available for this feature:
BLAST of FE659184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
CYC_CHLRE3.104e-1772.22Cytochrome c OS=Chlamydomonas reinhardtii GN=CYC1 ... [more]
CYC_ENTIN1.179e-1667.92Cytochrome c OS=Enteromorpha intestinalis PE=1 SV=... [more]
CYC2_MOUSE7.911e-1371.11Cytochrome c, testis-specific OS=Mus musculus GN=C... [more]
CYC_MACGI1.033e-1266.67Cytochrome c OS=Macropus giganteus GN=CYCS PE=1 SV... [more]
CYC2_RAT1.033e-1271.11Cytochrome c, testis-specific OS=Rattus norvegicus... [more]
CYC_HIPAM1.762e-1266.67Cytochrome c OS=Hippopotamus amphibius GN=CYCS PE=... [more]
CYC_SHEEP2.302e-1266.67Cytochrome c OS=Ovis aries GN=CYCS PE=1 SV=2[more]
CYC_PIG2.302e-1266.67Cytochrome c OS=Sus scrofa GN=CYCS PE=1 SV=2[more]
CYC_MIRLE2.302e-1266.67Cytochrome c OS=Mirounga leonina GN=CYCS PE=1 SV=2[more]
CYC_MINSC2.302e-1266.67Cytochrome c OS=Miniopterus schreibersi GN=CYCS PE... [more]

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Properties
Property NameValue
Genbank description82 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659184 ID=FE659184; Name=FE659184; organism=Citrus sinensis; type=EST; length=178bp
ACCCAGGTGTAGTCCCCGATTGCCTTCCAAACAATCCGTTCAAATTAGGA
CCTTGTTTGTGACCGGCGCCTTTCTCGACGGTGTGGCACTGAGCGCACTT
GGTCTTGAAGATCTTCTCTCCGGCCTTTGCATTGCCGGGAGGTGCCTCAT
CAAACGACGCCATTATTGTGGTGTTTTG
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