FE659124

Overview
NameFE659124
Unique NameFE659124
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE659124 vs. ExPASy Swiss-Prot
Match: PKNX1_MOUSE (Homeobox protein PKNOX1 OS=Mus musculus GN=Pknox1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.674e-11
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 1
Query:  265 ELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 504
            +L+++L Q   +  +   E+   K + G LP   T+V+++W  QH   PYPTED+K ++  +T L L Q+NNWFIN R+R
Sbjct:  240 QLQLQLNQDLSTLHQ---EDGSSKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 316          
BLAST of FE659124 vs. ExPASy Swiss-Prot
Match: PKNX2_MOUSE (Homeobox protein PKNOX2 OS=Mus musculus GN=Pknox2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 1
Query:  319 EEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 504
            E+   K + G LP   T+++++W  QH   PYPTED+K ++  +T L L Q+NNWFIN R+R
Sbjct:  284 EDKKSKNKRGVLPKHATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRR 345          
BLAST of FE659124 vs. ExPASy Swiss-Prot
Match: PKNX2_HUMAN (Homeobox protein PKNOX2 OS=Homo sapiens GN=PKNOX2 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 1
Query:  319 EEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 504
            E+   K + G LP   T+++++W  QH   PYPTED+K ++  +T L L Q+NNWFIN R+R
Sbjct:  284 EDKKSKNKRGVLPKHATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRR 345          
BLAST of FE659124 vs. ExPASy Swiss-Prot
Match: PKNX1_HUMAN (Homeobox protein PKNOX1 OS=Homo sapiens GN=PKNOX1 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 1
Query:  265 ELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 504
            +L+++L Q      +D       K + G LP   T+V+++W  QH   PYPTED+K ++  +T L L Q+NNWFIN R+R
Sbjct:  240 QLQLQLNQDLSILHQDDGSS---KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 316          
BLAST of FE659124 vs. ExPASy Swiss-Prot
Match: PKNX1_BOVIN (Homeobox protein PKNOX1 OS=Bos taurus GN=PKNOX1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 1
Query:  265 ELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 504
            +L+++L Q      +D       K + G LP   T+V+++W  QH   PYPTED+K ++  +T L L Q+NNWFIN R+R
Sbjct:  240 QLQLQLNQDLSILHQDDGSS---KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 316          
BLAST of FE659124 vs. ExPASy Swiss-Prot
Match: MEIS3_MOUSE (Homeobox protein Meis3 OS=Mus musculus GN=Meis3 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 28/66 (42.42%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  307 EDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 504
            ED+  E  R ++ G  P   T++++ W  QH   PYP+E+ K +L ++TGL + Q+NNWFIN R+R
Sbjct:  257 EDLDLERRRNKKRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 322          
The following BLAST results are available for this feature:
BLAST of FE659124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
PKNX1_MOUSE4.674e-1140.00Homeobox protein PKNOX1 OS=Mus musculus GN=Pknox1 ... [more]
PKNX2_MOUSE7.972e-1145.16Homeobox protein PKNOX2 OS=Mus musculus GN=Pknox2 ... [more]
PKNX2_HUMAN7.972e-1145.16Homeobox protein PKNOX2 OS=Homo sapiens GN=PKNOX2 ... [more]
PKNX1_HUMAN7.972e-1140.00Homeobox protein PKNOX1 OS=Homo sapiens GN=PKNOX1 ... [more]
PKNX1_BOVIN7.972e-1140.00Homeobox protein PKNOX1 OS=Bos taurus GN=PKNOX1 PE... [more]
MEIS3_MOUSE7.972e-1142.42Homeobox protein Meis3 OS=Mus musculus GN=Meis3 PE... [more]

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Properties
Property NameValue
Genbank descriptionC63 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659124 ID=FE659124; Name=FE659124; organism=Citrus sinensis; type=EST; length=592bp
ACTTTCAAAGAGCAGCTTCAGCAGCACGTCAGAGTCCATGCCGTTGAAGC
TGTCATGGGCTGCCGTGAAATTGAGAATACTTTGCAAGCTCTCACCGGAG
TATCATTGGGTGAAGGGACAGGCGCAACAATGTCTGACGATGAGGATGAC
CTACATATGGATTTCTCTCTTGATCAATCTGCTTCTGATAGTCATGATTT
GATGGGTTTTGGTCCATTACTTCCTACTGAAACTGAAAGGTCTCTTATGG
AAAGAGTTAGACAGGAGTTGAAGATTGAACTGAAGCAGGGTTTTAAATCA
AGAATTGAAGATGTAAGAGAGGAAATATTGAGAAAAAGAAGGGCCGGAAA
ATTGCCCGGTGACACAACTTCAGTGCTCAAGACTTGGTGGCAGCAACACT
CCAAATGGCCATACCCAACTGAAGATGACAAGGCAAAGCTAGTGGAGGAG
ACAGGCTTGCAACTAAAGCAAATCAACAACTGGTTCATCAACCAGAGGAA
GCGCAACTGGCACAGCAACTCCCAGTCTGTGACGTCTTTAAAGTCAAAGC
GCAAAAGCTCTATCTAGCTAGCTTGCTTTTGTGGCTCTGGGG
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