FE659121

Overview
NameFE659121
Unique NameFE659121
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length222
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19_MOUSE (60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.910e-24
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            L++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRK
Sbjct:   10 LASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRK 82          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19_MACFA (60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 9.910e-24
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            L++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRK
Sbjct:   10 LASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRK 82          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19_HUMAN (60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.910e-24
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            L++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRK
Sbjct:   10 LASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRK 82          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19_BOVIN (60S ribosomal protein L19 OS=Bos taurus GN=RPL19 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.910e-24
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            L++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRK
Sbjct:   10 LASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRK 82          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19_DANRE (60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.690e-23
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            L++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG II+KP  +HSR+R R+   A+RKGRH G GKRK
Sbjct:   10 LASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIKKPVTVHSRARCRKNTLARRKGRHMGVGKRK 82          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.883e-23
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            L++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG II+KP  +HSR+R R+   A+RKGRH G GKRK
Sbjct:   10 LASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSRARCRKNTLARRKGRHMGIGKRK 82          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19_DICDI (60S ribosomal protein L19 OS=Dictyostelium discoideum GN=rpl19 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.438e-22
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKR 217
            L+AS+LKCG+G+VW+DPNE+ +++MANSR N+R+L+  GFI+RKP  +HSRSRAR    AKR GRH G G R
Sbjct:   10 LAASILKCGKGRVWIDPNEIADVAMANSRDNVRRLIATGFIMRKPVVVHSRSRAREHNAAKRLGRHRGAGNR 81          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19_MAIZE (60S ribosomal protein L19 (Fragment) OS=Zea mays GN=RPL19 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.699e-21
Identity = 47/56 (83.93%), Postives = 53/56 (94.64%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARR 169
            L+AS LKCG+GKVWLDPNEV+EISMANSRQNIRKLVKDGFII+KP KIHSRSR ++
Sbjct:    7 LAASYLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIKKPHKIHSRSRCKK 62          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19_YEAST (60S ribosomal protein L19 OS=Saccharomyces cerevisiae GN=RPL19A PE=1 SV=5)

HSP 1 Score: 96.6709 bits (239), Expect = 3.897e-20
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            L+ASV+  G+ KVWLDPNE +EI+ ANSR  IRKLVK+G I++K   +HS+SR R   ++KR+GRHSGYGKRK
Sbjct:   10 LAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRK 82          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19_PYRHO (50S ribosomal protein L19e OS=Pyrococcus horikoshii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.213e-15
Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            ++A +LKCG  +VW+DP +V+E++ A +R++IR+L+K+G I +KP +  SR RAR   E K+KGRH G G RK
Sbjct:   10 IAAELLKCGENRVWIDPEKVDEVASAITREDIRRLIKEGVIRKKPIEGQSRYRARIRHEQKKKGRHRGPGSRK 82          
The following BLAST results are available for this feature:
BLAST of FE659121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL19_MOUSE9.910e-2468.4960S ribosomal protein L19 OS=Mus musculus GN=Rpl19... [more]
RL19_MACFA9.910e-2468.4960S ribosomal protein L19 OS=Macaca fascicularis G... [more]
RL19_HUMAN9.910e-2468.4960S ribosomal protein L19 OS=Homo sapiens GN=RPL19... [more]
RL19_BOVIN9.910e-2468.4960S ribosomal protein L19 OS=Bos taurus GN=RPL19 P... [more]
RL19_DANRE1.690e-2368.4960S ribosomal protein L19 OS=Danio rerio GN=rpl19 ... [more]
RL19_ICTPU2.883e-2368.4960S ribosomal protein L19 OS=Ictalurus punctatus G... [more]
RL19_DICDI5.438e-2261.1160S ribosomal protein L19 OS=Dictyostelium discoid... [more]
RL19_MAIZE2.699e-2183.9360S ribosomal protein L19 (Fragment) OS=Zea mays G... [more]
RL19_YEAST3.897e-2061.6460S ribosomal protein L19 OS=Saccharomyces cerevis... [more]
RL19_PYRHO2.213e-1549.3250S ribosomal protein L19e OS=Pyrococcus horikoshi... [more]

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Properties
Property NameValue
Genbank descriptionC60 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659121 ID=FE659121; Name=FE659121; organism=Citrus sinensis; type=EST; length=222bp
GCTCTCCGCTAGCGTCCTCAAGTGCGGACGTGGCAAGGTCTGGCTTGACC
CTAATGAGGTCAACGAAATCTCCATGGCCAACTCCAGGCAGAACATTAGG
AAATTGGTGAAGGATGGTTTCATCATCAGGAAGCCAACAAAGATCCACTC
CCGTTCTCGCGCTCGCAGAATGAAGGAAGCCAAGAGGAAGGGCCGTCACT
CTGGATATGGTAAGAGAAAGGG
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