FE659121

Overview
NameFE659121
Unique NameFE659121
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length222
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19_PYRAB (50S ribosomal protein L19e OS=Pyrococcus abyssi GN=rpl19e PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.890e-15
Identity = 35/73 (47.95%), Postives = 53/73 (72.60%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            ++A +LKCG  ++W+DP  V++++ A +R++IR+L+K+G I +KP K  SR RAR   E K+KGRH G G RK
Sbjct:   10 VAAELLKCGENRIWIDPERVDDVASAITREDIRRLIKEGVIKKKPVKGQSRYRARIRHEQKKKGRHRGPGSRK 82          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19_PYRFU (50S ribosomal protein L19e OS=Pyrococcus furiosus GN=rpl19e PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.098e-14
Identity = 32/73 (43.84%), Postives = 53/73 (72.60%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            ++A +LKCG  ++W+DP  +++++ A +R++I++L+K+G I +KP K  SR RA+   E K+KGRH G G RK
Sbjct:   10 IAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGSRK 82          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19_ARCFU (50S ribosomal protein L19e OS=Archaeoglobus fulgidus GN=rpl19e PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.118e-14
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            L+ASVLKCG  +VW DP  + +I+ A ++Q+IR+L++ G I RKP    SR+R  + K  KRKGR  G+G RK
Sbjct:   12 LAASVLKCGENRVWFDPAALEDIATAATKQDIRELIEQGVIKRKPVNGVSRARINKRKLQKRKGRRRGHGSRK 84          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19_METJA (50S ribosomal protein L19e OS=Methanocaldococcus jannaschii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.290e-12
Identity = 30/73 (41.10%), Postives = 51/73 (69.86%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            ++A +LKCG  +VW+DP +++ + MA S+ +IR L+K+G I +K  K  S +R +++KE ++KGR  G G R+
Sbjct:   12 MAAEILKCGIERVWIDPTQLDRVKMAMSKDDIRALIKEGVIKKKQKKGISSARVKKLKEQRKKGRRRGPGSRR 84          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19_METVA (50S ribosomal protein L19e OS=Methanococcus vannielii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.532e-11
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            ++A+VL CG  +VW+DP  + ++ MA ++ +IR L+ DG I++K  K  S +R + ++E KRKG+  G G R+
Sbjct:    9 IAAAVLDCGIDRVWVDPENLEKVKMAITKDDIRLLINDGIIVKKQEKGISSARKKEVQEQKRKGKRKGPGSRR 81          
BLAST of FE659121 vs. ExPASy Swiss-Prot
Match: RL19_METTH (50S ribosomal protein L19e OS=Methanobacterium thermoautotrophicum GN=rpl19e PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.621e-11
Identity = 29/73 (39.73%), Postives = 48/73 (65.75%), Query Frame = 2
Query:    2 LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK 220
            L+A +LK G  ++W+DP  ++E+S A +R  +++L+KDG I  KP K  S  R++++ + K+KGR  G G  K
Sbjct:    9 LAADILKVGVNRIWIDPERIDEVSRAITRDGVKQLIKDGAIKAKPKKGISSYRSKKIAQQKKKGRRRGPGSIK 81          
The following BLAST results are available for this feature:
BLAST of FE659121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL19_PYRAB2.890e-1547.9550S ribosomal protein L19e OS=Pyrococcus abyssi GN... [more]
RL19_PYRFU1.098e-1443.8450S ribosomal protein L19e OS=Pyrococcus furiosus ... [more]
RL19_ARCFU7.118e-1449.3250S ribosomal protein L19e OS=Archaeoglobus fulgid... [more]
RL19_METJA2.290e-1241.1050S ribosomal protein L19e OS=Methanocaldococcus j... [more]
RL19_METVA2.532e-1139.7350S ribosomal protein L19e OS=Methanococcus vannie... [more]
RL19_METTH9.621e-1139.7350S ribosomal protein L19e OS=Methanobacterium the... [more]

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Properties
Property NameValue
Genbank descriptionC60 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659121 ID=FE659121; Name=FE659121; organism=Citrus sinensis; type=EST; length=222bp
GCTCTCCGCTAGCGTCCTCAAGTGCGGACGTGGCAAGGTCTGGCTTGACC
CTAATGAGGTCAACGAAATCTCCATGGCCAACTCCAGGCAGAACATTAGG
AAATTGGTGAAGGATGGTTTCATCATCAGGAAGCCAACAAAGATCCACTC
CCGTTCTCGCGCTCGCAGAATGAAGGAAGCCAAGAGGAAGGGCCGTCACT
CTGGATATGGTAAGAGAAAGGG
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