EY720799

Overview
NameEY720799
Unique NameEY720799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720799 vs. ExPASy Swiss-Prot
Match: RPB2_ENCCU (DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon cuniculi GN=RPB2 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.371e-30
Identity = 67/151 (44.37%), Postives = 92/151 (60.93%), Query Frame = 3
Query:   18 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 470
            G E +Y+G TG  +R+ +F GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+I+HGA+A L ERL  +SD+Y  ++C  C  +A                 C+ C++  ++    +PY  KLL QEL  M I
Sbjct:  992 GLEVMYNGMTGRKLRAQMFFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDAYSCYVCDFCGLLA---------MGGSKVNECKGCNNTTNVSMVEIPYAFKLLIQELMGMNI 1133          
BLAST of EY720799 vs. ExPASy Swiss-Prot
Match: RPB2_CAEEL (DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis elegans GN=rpb-2 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 5.282e-30
Identity = 67/153 (43.79%), Postives = 90/153 (58.82%), Query Frame = 3
Query:   18 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 470
            G E +Y+G TG+ + + IF GPT+YQRL HM +DK+  R  GP+  + RQP+  R R GG++FGEMERDC I+HGA   L ERLF +SD Y +++C  C    VAN+               C+ C +   +    +PY  KLL QEL SM I
Sbjct: 1030 GNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVANLRTNSFE---------CKACRNKTQVSAVRIPYACKLLFQELMSMSI 1173          
BLAST of EY720799 vs. ExPASy Swiss-Prot
Match: RPB2_SCHPO (DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces pombe GN=rpb2 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.537e-29
Identity = 68/151 (45.03%), Postives = 90/151 (59.60%), Query Frame = 3
Query:   18 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 470
            G E +Y G TG  + + +F+GPT+YQRL H+ +DK+  R  GPV  LTRQPV  R R GG++FGEMERDC I+HG ++ L ERLF  SD+Y++ +C  C  +A                 CR C +     +  +PY AKLL QEL SM I
Sbjct: 1057 GFEVMYHGHTGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRERLFDCSDAYRVIVCDICGLIAIASYKKDSYE-------CRSCQNRTRFSQVYLPYAAKLLFQELMSMNI 1200          
BLAST of EY720799 vs. ExPASy Swiss-Prot
Match: RPC2_YEAST (DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces cerevisiae GN=RET1 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.423e-29
Identity = 68/158 (43.04%), Postives = 91/158 (57.59%), Query Frame = 3
Query:   18 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDAE 491
            G + LY G TGE +++ IF GP +YQ+L HM  DK+  R  GP   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC                    +C  C S ++I+K  +PY AKLL QEL SM I  +   E
Sbjct: 1000 GKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKC-------------GLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLE 1144          
BLAST of EY720799 vs. ExPASy Swiss-Prot
Match: RPOB1_METTH (DNA-directed RNA polymerase subunit B' OS=Methanobacterium thermoautotrophicum GN=rpoB1 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.626e-29
Identity = 73/158 (46.20%), Postives = 88/158 (55.70%), Query Frame = 3
Query:   18 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDAE 491
            G E LY+G TGE + + IFIG  +YQ+L HM+ DKV  R+ GPV  LTRQP   R R GG++FGEMERDCLIAHGAA  L ERL   SD Y+  +C  C  +A                YC IC+  +      V Y  KLL  EL S+ I  K   E
Sbjct:  451 GVESLYNGITGERIEAEIFIGVAYYQKLHHMTTDKVYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHGAALALKERLLDESDKYEALVCADCGMIA-------VYDKIRDKKYCPICEDSESF-PVEVSYAFKLLLDELKSLCIFPKLILE 600          
BLAST of EY720799 vs. ExPASy Swiss-Prot
Match: RPOB1_METTW (DNA-directed RNA polymerase subunit B' OS=Methanobacterium thermoautotrophicum (strain Winter) GN=rpoB1 PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.699e-28
Identity = 70/158 (44.30%), Postives = 89/158 (56.33%), Query Frame = 3
Query:   18 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDAE 491
            G E LY+G TGE + + IFIG  +YQ+L HM+ D++  R+ GPV  LTRQP   R R GG++FGEMERDCLIAHGAA  L ERL   SD Y+  +C +C  +A                YC IC+  +      + Y  KLL  EL S+ I  K   E
Sbjct:  452 GVETLYNGITGERIEAEIFIGVAYYQKLHHMTTDRIYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHGAALALKERLLDESDKYEALVCAECGMIA-------IYDKIRDKKYCPICEDSESF-PVEISYAFKLLLDELKSLCIFPKLVLE 601          
BLAST of EY720799 vs. ExPASy Swiss-Prot
Match: RPB2_IIV3 (Probable DNA-directed RNA polymerase II subunit RPB2 homolog OS=Invertebrate iridescent virus 3 GN=IIV3-009R PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.699e-28
Identity = 65/156 (41.67%), Postives = 94/156 (60.26%), Query Frame = 3
Query:   18 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 485
            G+E +Y G TGE ++S IF+GPT+Y RL HM +DK+  R+ G V  L RQP   R + GG++FGEME+DC++ HGA   L+ER+F  SD +Q+ +C+ C  +++  +             C  C S  ++ + N+PY  K L QEL  MGI  K D
Sbjct:  997 GSEVMYSGFTGERIQSTIFMGPTYYHRLKHMVKDKMHARSHGQVTTLHRQPNCGRSQGGGLRFGEMEKDCILVHGATQFLNERMFLNSDPFQIDVCKDCGMMSSTSKK------------CHHCGS-INVKRCNIPYSCKNLLQELNGMGIKTKID 1139          
BLAST of EY720799 vs. ExPASy Swiss-Prot
Match: RPC2_DROME (DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila melanogaster GN=RpIII128 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 3.204e-27
Identity = 63/158 (39.87%), Postives = 89/158 (56.33%), Query Frame = 3
Query:   18 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDAE 491
            G +  Y G TG  + + I+ GP +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLI++GA+  + ERL   SD++++ +CR C  +A                +C  C S  ++ K ++PY  KLL QEL SM +  K   E
Sbjct:  991 GKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRMA-------------YCSWCHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMILE 1135          
BLAST of EY720799 vs. ExPASy Swiss-Prot
Match: RPC2_SCHPO (DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces pombe GN=rpc2 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.138e-27
Identity = 67/158 (42.41%), Postives = 87/158 (55.06%), Query Frame = 3
Query:   18 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDAE 491
            G + L  G TGE + + IF+GP +YQ+L HM  DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD+  + +C +C                    +C  C S  ++VK  +PY AKLL QEL SM I  +   E
Sbjct: 1016 GKDMLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDACDVDVCGQC-------------GLLGYKGWCNSCQSTREVVKMTIPYAAKLLFQELLSMNIVPRLALE 1160          
BLAST of EY720799 vs. ExPASy Swiss-Prot
Match: RPOB_THECE (DNA-directed RNA polymerase subunit B OS=Thermococcus celer GN=rpoB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.323e-27
Identity = 65/151 (43.05%), Postives = 85/151 (56.29%), Query Frame = 3
Query:   18 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQXXXXXXXXXXXPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 470
            G E +YDG TG  + + +F+G  +YQRL HM  DK+  R+ GPV  LT+QP   R R GG++FGEMERD LI HGAA  L ERL   SD  ++ +C  C ++A                YC +C   + I K  + Y  KLL  EL +MGI
Sbjct:  969 GREVMYDGITGRRLEADVFVGVIYYQRLHHMVADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCENCGHIA-------LEDKRRGKVYCPVCGEEERISKVEMSYAFKLLLDELKAMGI 1112          
The following BLAST results are available for this feature:
BLAST of EY720799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPB2_ENCCU2.371e-3044.37DNA-directed RNA polymerase II subunit RPB2 OS=Enc... [more]
RPB2_CAEEL5.282e-3043.79DNA-directed RNA polymerase II subunit RPB2 OS=Cae... [more]
RPB2_SCHPO1.537e-2945.03DNA-directed RNA polymerase II subunit RPB2 OS=Sch... [more]
RPC2_YEAST3.423e-2943.04DNA-directed RNA polymerase III subunit RPC2 OS=Sa... [more]
RPOB1_METTH7.626e-2946.20DNA-directed RNA polymerase subunit B' OS=Methanob... [more]
RPOB1_METTW1.699e-2844.30DNA-directed RNA polymerase subunit B' OS=Methanob... [more]
RPB2_IIV31.699e-2841.67Probable DNA-directed RNA polymerase II subunit RP... [more]
RPC2_DROME3.204e-2739.87DNA-directed RNA polymerase III subunit RPC2 OS=Dr... [more]
RPC2_SCHPO7.138e-2742.41DNA-directed RNA polymerase III subunit RPC2 OS=Sc... [more]
RPOB_THECE9.323e-2743.05DNA-directed RNA polymerase subunit B OS=Thermococ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-014-D09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720799 ID=EY720799; Name=EY720799; organism=Citrus sinensis; type=EST; length=879bp
CACGCGTCCGCAAATGGGGAACGGAGAGACTTTATGATGGCCGAACTGGT
GAAATGGTTCGTTCGCTCATATTTATAGGGCCAACATTTTACCAGCGACT
TATTCACATGTCTGAGGACAAAGTCAAGTTTCGAAACACTGGGCCAGTCC
ACCCCCTCACCCGACAGCCAGTGGCGGACAGGAAGCGATTTGGTGGGATC
AAGTTTGGTGAGATGGAGCGTGACTGTCTTATAGCCCATGGTGCTGCTGC
CAACTTGCATGAACGCCTGTTTACGCTGAGCGACTCCTACCAGATGCATA
TTTGTAGGAAATGCAAGAACGTTGCAAATGTGATCCAACGGGTAGTGGGT
GGTGGACGTAAGGTTCGGGGCCCCTATTGCCGTATATGTGATTCAGGAGA
TGACATAGTTAAGGCTAATGTACCTTATGGAGCGAAGTTACTTTGTCAAG
AACTTTTCAGCATGGGCATCACTTTAAAGTTCGACGCTGAGTGCTGTTGA
GTTTCCATGGTGGCGTGGAACTCATTTAAACCTACTGTTAGGTGTATATA
TGTAAAAATTTGGAGAATATGTGGAAAGCAGTTGTTTAGCTCAACATCCC
TTGTGAGGTCCGACGTTTTGTTCCAGGAGACTGTGATGCATGGCGTATTT
GAAAGGGCGGAATCTCGGCGGCGGCCGAGCCCCTGAGGGTCTTAAAAAAA
ACAAAAAAAAAGGGCTGCCGATCTAATATATCCATGCGTCCGTCACCGTG
GGTGGGAGGTTTTGGCTCGGCCAGAGGGTCGCCCCACTCAGTCGCTGGGC
GAACCGTGTAACGGGTCTGGACGGGGAAAACCGGTGAGTAAAGAAGTTAA
CGGATGGAAGAAATTCCCCTTTGCTGAGG
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