FE659079

Overview
NameFE659079
Unique NameFE659079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length299
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10454 contig Csv1_Contig10454:213..511. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 8.005e-37
Identity = 66/99 (66.67%), Postives = 79/99 (79.80%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNLYSQGYGTNTAALSTALFN+G +CGSCYE++C N    CLPG+I VTATNFC          GGWCNPP+ HFD+++P F HIAQYRAG+VPV+++R
Sbjct:   48 GNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRR 146          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 3.042e-36
Identity = 65/101 (64.36%), Postives = 79/101 (78.22%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNLYSQGYG NTAALSTALFNNG SCG+C+E+KC +DPKWC  G  +I +TATNFC          GGWCNPP+ HFDL+ P+F  IA+YRAG+VPV+++R
Sbjct:   55 GNLYSQGYGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRR 155          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.973e-36
Identity = 67/103 (65.05%), Postives = 81/103 (78.64%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDP--KWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNLYSQGYG N AALSTALFN+G SCG+C+EIKCVN P  +WC PG+  I++TATNFC          GGWCNPP+ HFDL+ P+F HIA+YRAG+VPV+Y+R
Sbjct:   60 GNLYSQGYGVNNAALSTALFNSGQSCGACFEIKCVNQPGWEWCHPGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRR 162          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 5.188e-36
Identity = 62/99 (62.63%), Postives = 80/99 (80.81%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNL+SQGYG  TAALSTALFN+G  CG+C+E++C +DP+WC+PG+I+V+ATNFC          GGWCNPP +HFDL++P F  IAQYRAG+VPVA++R
Sbjct:   56 GNLHSQGYGLQTAALSTALFNSGQKCGACFELQCEDDPEWCIPGSIIVSATNFCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRR 154          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 8.850e-36
Identity = 62/99 (62.63%), Postives = 76/99 (76.77%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNLYS GYGTNTAALST LFN+G +CGSCYE++C ND +WCLPG++ VTATN C          GGWCNPP+ HFD+++P F  I  YRAG+VPV+Y+R
Sbjct:   53 GNLYSTGYGTNTAALSTVLFNDGAACGSCYELRCDNDGQWCLPGSVTVTATNLCPPNYALPNDDGGWCNPPRPHFDMAEPAFLQIGVYRAGIVPVSYRR 151          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.972e-35
Identity = 66/102 (64.71%), Postives = 80/102 (78.43%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCV---NDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNLYSQGYGTNTAALSTALFNNGLSCG+C+E++C         CLPG+++VTATNFC          GGWCNPP+ HFD+SQPVFQ IA ++AG+VPV+Y+R
Sbjct:   88 GNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCDAGGGGSHSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRR 189          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 7.492e-35
Identity = 65/99 (65.66%), Postives = 77/99 (77.78%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            G+L+ QGYG  TAALSTALFN G +CG+CY+I CV+DP+WCLPGTI +TATNFC          G WCNPPQ+HFDLS P+F  IAQY+AGVVPV Y+R
Sbjct:   79 GDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPGTIKITATNFC--PPDYSKTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRR 175          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 7.492e-35
Identity = 64/99 (64.65%), Postives = 77/99 (77.78%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            G+L+ QGYG  TAALSTALFN G +CG+CY+I CVNDP+WCLPG++ +TATNFC          G WCNPPQ+HFDLS P+F  IAQY+AGVVPV Y+R
Sbjct:   72 GDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVNDPQWCLPGSVKITATNFC--PPDYSKTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRR 168          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.111e-33
Identity = 64/102 (62.75%), Postives = 79/102 (77.45%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKW-CLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNLYSQGYGT+TAALSTALFN GLSCGSCYE++C  D +  CLPG  T+ VTATNFC          GGWCNPP++HFDL++P F  IA++ AG+VPV+++R
Sbjct:   52 GNLYSQGYGTSTAALSTALFNRGLSCGSCYELRCAGDHRRSCLPGGATVTVTATNFCPPNYALPSDGGGWCNPPRRHFDLAEPAFLRIARHAAGIVPVSFRR 153          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 9.158e-33
Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            G+L+ QGYG  TAALSTALFNNG  CG+CYEI C + P+WCLPG+I +TATNFC            WCNPPQ+HFDLSQP+F  IA+Y+AGVVPV ++R
Sbjct:  114 GDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPGSIKITATNFC--PPDFTKPNDNWCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRR 210          
The following BLAST results are available for this feature:
BLAST of FE659079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXPA4_ORYSI8.005e-3766.67Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA6_ARATH3.042e-3664.36Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXPA7_ORYSJ3.973e-3665.05Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA2_ARATH5.188e-3662.63Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXPA2_ORYSJ8.850e-3662.63Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA5_ORYSJ1.972e-3564.71Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP25_ARATH7.492e-3565.66Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP23_ARATH7.492e-3564.65Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXPA6_ORYSJ4.111e-3362.75Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP24_ARATH9.158e-3362.63Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC18 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659079 ID=FE659079; Name=FE659079; organism=Citrus sinensis; type=EST; length=299bp
TGGGAATCTGTATAGCCAGGGTTATGGAACGAACACTGCAGCCTTGAGCA
CGGCTTTGTTCAACAACGGTTTGAGCTGTGGGTCTTGCTATGAGATTAAG
TGTGTTAATGACCCCAAATGGTGCTTGCCCGGCACCATTATGGTCACAGC
TACCAATTTTTGCCCACCGAACAACGCCCTCCCCAACAATGCAGGCGGTT
GGTGCAATCCTCCGCAGCAACATTTTGATCTCTCTCAGCCTGTGTTCCAA
CACATTGCTCAATACAGAGCTGGAGTTGTCCCTGTAGCTTACAAGAGGG
back to top