FE659079

Overview
NameFE659079
Unique NameFE659079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length299
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10454 contig Csv1_Contig10454:213..511. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 3.257e-30
Identity = 58/102 (56.86%), Postives = 73/102 (71.57%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVN--DPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNLY+QGYGT TAALSTALF++G SCG CY + C    DP+WC  G ++ VTATNFC          GGWCNPP+ HFD++QP ++ I  YR G+VPVA++R
Sbjct:   58 GNLYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRR 159          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 3.257e-30
Identity = 58/102 (56.86%), Postives = 72/102 (70.59%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVND--PKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            G+LYSQGYGT  AALSTALFN+G SCG CY+I C     P+WC PG T+ +TATNFC          GGWCNPP+ HFD++QP ++ I  Y AG++PV Y+R
Sbjct:   58 GDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQR 159          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.257e-30
Identity = 57/101 (56.44%), Postives = 73/101 (72.28%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC-VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNLYS GYGTNTAALS+ALFN+G +CG CY+I C  ++ KWC  GT + +TATN C          GGWCNPP+QHFD++QP ++ I  YR G+VPV ++R
Sbjct:   48 GNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKAGTSVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQR 148          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.758e-29
Identity = 58/102 (56.86%), Postives = 72/102 (70.59%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC-VNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNLY+ GYG   AALS+ALFN+G  CG+CY I C  +  KWC PG  +I +TATN C          GGWCNPP+QHFD+SQP +++IA Y+AG+VPV YKR
Sbjct:   52 GNLYNAGYGLYNAALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKR 153          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.758e-29
Identity = 58/102 (56.86%), Postives = 69/102 (67.65%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDP--KWCLP-GTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNLY QGYG   AALSTALFN+G +CG CY I C  D   +WC P G + VTATN C          GGWCNPP++HFD+SQP ++ I  YRAG+VPV Y+R
Sbjct:   51 GNLYDQGYGLENAALSTALFNDGAACGQCYLIVCDTDKAGRWCKPRGAVTVTATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRR 152          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.758e-29
Identity = 56/102 (54.90%), Postives = 72/102 (70.59%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVN--DPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNLY  GYGTNTAALS+ALFN+G SCG CY+I C +  +P+WCL G T+ +T TN C          GGWCNPP+ HFD+++P +  I  Y+AG+VPV Y+R
Sbjct:   56 GNLYWSGYGTNTAALSSALFNDGASCGQCYQIACDHQAEPRWCLQGRTVTITGTNLCPPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQR 157          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.758e-29
Identity = 57/102 (55.88%), Postives = 73/102 (71.57%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVN--DPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            G+LYS GYGT TAALSTALFN+G SCG CY I C +  D +WCL G ++++TATNFC          GGWCNPP +HFD++QP ++ I  YR G+VPV ++R
Sbjct:   50 GDLYSAGYGTMTAALSTALFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQR 151          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.787e-28
Identity = 57/101 (56.44%), Postives = 70/101 (69.31%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC-VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNLY+ GYG N AALS+ALFN+G  CG+CY I C  +   WC PGT I +TATN C          GGWCNPP++HFD+SQP +  IA Y+AG+VPV +KR
Sbjct:   47 GNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKR 147          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 3.982e-28
Identity = 57/102 (55.88%), Postives = 68/102 (66.67%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVND--PKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNLY QGYG + AALS ALFN+G SCG CY I C     P+WC  GT + VTATN C          GGWCNPP+ HFD+SQP ++ I  Y+AG+VPV Y+R
Sbjct:   52 GNLYDQGYGVDNAALSQALFNDGASCGQCYLIVCDTSRAPQWCKAGTAVTVTATNLCPPNWALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQR 153          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 3.982e-28
Identity = 57/102 (55.88%), Postives = 68/102 (66.67%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNLY+QGYG   AALSTALFN G SCG CY I C     P+WC  GT + +TATN C          GGWCNPP+ HFD+SQP ++ I  YRAG+VPV Y++
Sbjct:   51 GNLYTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWCKAGTAVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQ 152          
The following BLAST results are available for this feature:
BLAST of FE659079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP29_ORYSJ3.257e-3056.86Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP14_ORYSJ3.257e-3056.86Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ORYSJ7.257e-3056.44Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA3_ORYSJ2.758e-2956.86Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP27_ORYSJ2.758e-2956.86Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP15_ORYSJ2.758e-2954.90Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH2.758e-2955.88Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP33_ORYSJ1.787e-2856.44Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP31_ORYSJ3.982e-2855.88Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP28_ORYSJ3.982e-2855.88Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionC18 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659079 ID=FE659079; Name=FE659079; organism=Citrus sinensis; type=EST; length=299bp
TGGGAATCTGTATAGCCAGGGTTATGGAACGAACACTGCAGCCTTGAGCA
CGGCTTTGTTCAACAACGGTTTGAGCTGTGGGTCTTGCTATGAGATTAAG
TGTGTTAATGACCCCAAATGGTGCTTGCCCGGCACCATTATGGTCACAGC
TACCAATTTTTGCCCACCGAACAACGCCCTCCCCAACAATGCAGGCGGTT
GGTGCAATCCTCCGCAGCAACATTTTGATCTCTCTCAGCCTGTGTTCCAA
CACATTGCTCAATACAGAGCTGGAGTTGTCCCTGTAGCTTACAAGAGGG
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