FE659079

Overview
NameFE659079
Unique NameFE659079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length299
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10454 contig Csv1_Contig10454:213..511. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.731e-23
Identity = 52/102 (50.98%), Postives = 64/102 (62.75%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNLY QGYG N AALST LFN+G SCG CY I C     P WC  G  I VT TN+C          GGWCN  + HFD+SQP +++I  Y AG++P+ Y++
Sbjct:   47 GNLYDQGYGINNAALSTPLFNDGASCGQCYLIICDYSKAPDWCKLGKAITVTGTNYC--PPNYDLPYGGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQ 146          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.261e-23
Identity = 48/94 (51.06%), Postives = 61/94 (64.89%), Query Frame = 2
Query:   23 YGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            Y T TAALST LF +G  CG CYE++CV  P WC PG+  +++T TN C          GGWCNPP+ HFD++ P F  +AQ  AG+VPV Y+R
Sbjct:   85 YSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRR 177          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 3.857e-23
Identity = 52/99 (52.53%), Postives = 65/99 (65.66%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            G+L   GYG  TAALSTALFN+G SCG+CYEI C  +P+ CL G+I +TAT+ C            WC  P +HFDLS P+F  IAQ +A +VPV Y+R
Sbjct:   70 GDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLC-------PPGSAWCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRR 161          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.579e-23
Identity = 48/100 (48.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT-IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            G+L   GYG  T  LS  LF  G  CG+C+E++CV+D +WC+PGT I++TATNFC          GG CNPP +HF L    F+ IA ++AG +PV Y+R
Sbjct:   64 GDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGTSIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR 163          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.273e-22
Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            G+L    YG  TA +S ALF  G +CG CYE++CVN   WCL G  T++VTAT+FC          GGWCN P++HF++S+  F  +A+ +A +VPV ++R
Sbjct:   58 GDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRR 158          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.715e-21
Identity = 51/102 (50.00%), Postives = 63/102 (61.76%), Query Frame = 2
Query:    5 NLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQY-RAGVVPVAYKR 298
            N Y  G+G +TAALS  LF +G SCG CY+++C    DPKWCL G  + VTATNFC           GWCN P+ HFD+S P F  IA+    G+VPV Y+R
Sbjct:   52 NPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFC-----PTNNNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRR 148          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.050e-20
Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            G+L    +   +A LS  LFN G SCG+C E++CVN  +WCL G+  ++VTAT+FC          GGWCN P++H +LS   F  IA+ RA ++P+ Y+R
Sbjct:   54 GDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRR 154          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.372e-20
Identity = 50/102 (49.02%), Postives = 62/102 (60.78%), Query Frame = 2
Query:    2 GNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            GNLY Q YG N AALST LFN+G SCG CY I C     P WC  G  I VT TN+           GGWCN  + +FD+SQP +++I  Y AG+VP+ Y++
Sbjct:   47 GNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQ 137          
BLAST of FE659079 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.520e-11
Identity = 38/95 (40.00%), Postives = 53/95 (55.79%), Query Frame = 2
Query:   14 SQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 298
            + GYG  TAA+S ALF+NG  CG+CYE+K  +        T++VTATN                    +HFDL+ P F  IA+ + GVVPV+Y++
Sbjct:  109 ADGYGAMTAAVSPALFDNGAGCGACYELKGDSGK------TVVVTATNQAPPPVNGMKG---------EHFDLTMPAFLSIAEEKLGVVPVSYRK 188          
The following BLAST results are available for this feature:
BLAST of FE659079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP19_ORYSJ1.731e-2350.98Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ORYSJ2.261e-2351.06Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ARATH3.857e-2352.53Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP13_ARATH6.579e-2348.00Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP16_ORYSJ7.273e-2245.54Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH4.715e-2150.00Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP20_ARATH1.050e-2043.56Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP20_ORYSJ1.372e-2049.02Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ1.520e-1140.00Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionC18 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659079 ID=FE659079; Name=FE659079; organism=Citrus sinensis; type=EST; length=299bp
TGGGAATCTGTATAGCCAGGGTTATGGAACGAACACTGCAGCCTTGAGCA
CGGCTTTGTTCAACAACGGTTTGAGCTGTGGGTCTTGCTATGAGATTAAG
TGTGTTAATGACCCCAAATGGTGCTTGCCCGGCACCATTATGGTCACAGC
TACCAATTTTTGCCCACCGAACAACGCCCTCCCCAACAATGCAGGCGGTT
GGTGCAATCCTCCGCAGCAACATTTTGATCTCTCTCAGCCTGTGTTCCAA
CACATTGCTCAATACAGAGCTGGAGTTGTCCCTGTAGCTTACAAGAGGG
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