EY720707

Overview
NameEY720707
Unique NameEY720707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720707 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.927e-16
Identity = 35/93 (37.63%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  233 RLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKXA 511
            +LF R++ IH +LG G  AD+ LWR K +S G++    A W++FE   Y + TL+  + +L L++LFLWS +++ +N+  P +P   + E  A
Sbjct:    7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMA 99          
BLAST of EY720707 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.133e-13
Identity = 32/85 (37.65%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  257 IHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKXA 511
            +H  LGAG  AD+ LWRN+  +  +L  +T  W LFE   Y+L++ V ++ +L +A+ FLW+ ++T +N+  P +P + +PE+ A
Sbjct:   13 VHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFA 97          
BLAST of EY720707 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.046e-12
Identity = 50/189 (26.46%), Postives = 86/189 (45.50%), Query Frame = 2
Query:  245 REKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWS--NASTFINKSPPEIPVVTLPEKXALNSPLP*GMKSTEPWLSCGKWRLEGT*XSFLVSLLACGFCLLS--GNGCTS*HYSTLYLFGYTPWPGIYEKYDDKIESFGEKARMRSRSIMQSLMKRV 799
            R + ++H LG G+ ADI  W+NKK S  +LG  T +W LFE++EY  IT +C I +L + +  +WS   +S  I   PP I  + + E           + +   W     + +       L+ L      +LS  GN  +S     +   G    P +YE+Y++++     K+    + ++     +V
Sbjct:   18 RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDLRISESNWR------FLFNKINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEEELTYAASKSGRDMKKLLNKFNSKV 200          
The following BLAST results are available for this feature:
BLAST of EY720707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RTNLL_ARATH5.927e-1637.63Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]
RTNLK_ARATH6.133e-1337.65Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLN_ARATH1.046e-1226.46Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-013-C06-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720707 ID=EY720707; Name=EY720707; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGCGCTCTCTCTCGTTCTAGAGTCTAGTACATTTTTCAATT
CATTTTCATCGGCGCTTACTCGGCGGCAGAGATCTATGGCGGAACATGCA
CCTGAGCACGAATCAGCCGACAAATCACTGGTGGAGAAGATCACGGATAA
GATCCATGGCCACGACTCCTCGTCATCTGACTCCGATGACGACAAGCCGT
CGTCTATTGACGCCTTTAAGTCCAAAGTATTCAGGCTCTTCGGAAGAGAA
AAACCTATTCACCATGTCCTCGGAGCTGGAAAACCTGCTGATATTTTCCT
ATGGAGGAACAAGAAAATCTCTGCTGGTGTGCTAGGTGGAGCCACTGCAA
TGTGGGTTCTCTTTGAGTTGCTGGAATACCATTTAATCACTTTGGTCTGC
CATATATCGATTCTCTCTCTGGCTGTTCTCTTCCTGTGGTCCAATGCATC
CACATTTATCAACAAATCACCGCCAGAGATTCCAGTTGTTACACTTCCTG
AGAAGNTTGCCTTGAATTCGCCTCTGCCTTGAGGTATGAAATCAACCGAG
CCTTGGCTGTCCTGCGGGAAATGGCGTCTGGAAGGGACTTGAANAAGTTT
CTTGGTGTCATTGCTGGCTTGTGGCTTTTGTCTATTGTCGGGTAATGGGT
GCACTTCGTGACATTATTCTACATTGTATTTGTTTGGCTACACCCCGTGG
CCCGGGATTTATGAGAAGTACGACGACAAGATTGAATCCTTTGGTGAGAA
GGCACGAATGAGATCCAGAAGCATTATGCAGTCTTTGATGAAAAGGGTTT
GAAAAGGGTTGGAGTCCATTTCCCACAGGGCTTGGAACAGCAGGGATAAA
GACCAGATTGTCCAGTTTGTGAAAACCACTGGCCGGGGGAGTGGGGGTTG
A
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