EY720674

Overview
NameEY720674
Unique NameEY720674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720674 vs. ExPASy Swiss-Prot
Match: GCSPB_RHOBA (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Rhodopirellula baltica GN=gcvPB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 40/110 (36.36%), Postives = 62/110 (56.36%), Query Frame = 1
Query:   85 WGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPAMSWP--VPGTLMIEPTESES 408
            +G+  +L  +Y Y+   G  GL   S+ A+L ANY+  ++ KH+  +  G      HEF+     LK    +   D+AKR++DYGFH P + +P  V   +M+EPTE+ES
Sbjct:  338 FGNTGVLVRAYIYLRTYGGDGLRHVSEDAVLGANYLLSKV-KHFLDVPHG--DRCMHEFVASATRLKKEKKLSAMDIAKRILDYGFHAPTVYFPLVVDEAVMVEPTETES 444          
BLAST of EY720674 vs. ExPASy Swiss-Prot
Match: GCSPB_UNCTG (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=gcvPB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 45/124 (36.29%), Postives = 71/124 (57.26%), Query Frame = 1
Query:   46 EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGL-KNTAGIEPEDVAKRLMDYGFHGPAMSWP--VPGTLMIEPTESES 408
            +K + +G + A      +IL  +Y YI  +G++GL   S+ A+LNANYM  R +    +          HEF++  + L KN   ++  DVAKRL+DYG++ P + +P  V   +M+EPTE+ES
Sbjct:  307 KKPKSIGKLKAFLGNFPVILK-AYVYIKSLGAEGLKNVSEWAVLNANYMLARFKDKIDV---PAGSRCMHEFVLSPKSLFKN--NVKTLDVAKRLLDYGYYAPTIYFPLIVEEAVMLEPTETES 424          
BLAST of EY720674 vs. ExPASy Swiss-Prot
Match: GCSPB_STAMF (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.412e-11
Identity = 43/112 (38.39%), Postives = 65/112 (58.04%), Query Frame = 1
Query:   85 WGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLE--KHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPAMSWP--VPGTLMIEPTESES 408
            +G+ + L   YTYI M+GSKGL   ++ A+LN NY    ++  + Y I + G +    HE ++  + L +  G+  EDVAK L+D GF+ P + +P  V   LM E TESE+
Sbjct:  345 FGNIVPLIWGYTYILMLGSKGLRTVTEQAVLNTNYFISLVKDIRGYDIPY-GKDRYRKHEVVLSAKPLYDDTGVSAEDVAKGLLDAGFYAPTIYFPLIVHEALMTEFTESET 455          
BLAST of EY720674 vs. ExPASy Swiss-Prot
Match: GCSPB_THEVO (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Thermoplasma volcanium GN=gcvPB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 44/123 (35.77%), Postives = 70/123 (56.91%), Query Frame = 1
Query:   46 EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPAMSWP--VPGTLMIEPTESES 408
            E  + +G +++  +GS  IL  +++YI   G  GL   S  A+LN+NY+ K+LEK+Y I +  +     HEF++     +NT G    D+ K ++D G H P + +P  V   +MIEPTE+ S
Sbjct:  311 ELKKTIGKVSSF-YGSFSILLRAWSYIIRNGDDGLKNVSARAVLNSNYLKKKLEKYYDIPYYPLK---KHEFVL---STENT-GKRALDIGKYILDNGIHSPTVYFPLIVKEAMMIEPTETVS 425          
The following BLAST results are available for this feature:
BLAST of EY720674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 354
Match NameE-valueIdentityDescription
GCSPB_RHOBA2.363e-1236.36Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_UNCTG6.875e-1236.29Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_STAMF3.412e-1138.39Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_THEVO9.928e-1135.77Probable glycine dehydrogenase [decarboxylating] s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-012-G11-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720674 ID=EY720674; Name=EY720674; organism=Citrus sinensis; type=EST; length=663bp
CTGCCTTCACATCCTGTGGTATCCACAGGTGGTATTCCTGCCCCTGAAAA
GTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTGGGGCTCTGCACTTA
TCCTGCCAATATCATATACGTACATAGCTATGATGGGTTCTAAAGGACTC
ACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAACTACATGGCAAAACG
TTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGTCAATGGAACAGTTG
CTCATGAATTCATTGTGGACTTAAGAGGCTTGAAAAATACTGCCGGGATA
GAGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCCATGGACC
AGCAATGTCATGGCCTGTTCCAGGCACACTTATGATTGAACCAACTGAAA
GTGAAAGCCANGGAATAGTTGGACAGGTATTGTGATGCTCTCATCTCCAT
CAAAGAACAAATTGACCCATTGACAATGGGAAAGGACATATCCACAAGAA
TGTCCTGAAGGGGGCGCCTCATCCACCATCTTTGGTCAGTGGGAAAGCTT
GGAACTAACCATACTCTCCAGAATATCGCAACTATGCTGGTTCGTGGATC
CGGTTTTGGAAATTCTTGGCTGCTAACGGGAGCCTTGACAATTTGTTTTG
GTTCCGCCACCTC
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