EY720616

Overview
NameEY720616
Unique NameEY720616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720616 vs. ExPASy Swiss-Prot
Match: PUR6_ECO57 (Phosphoribosylaminoimidazole carboxylase catalytic subunit OS=Escherichia coli O157:H7 GN=purE PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.012e-13
Identity = 48/142 (33.80%), Postives = 78/142 (54.93%), Query Frame = 2
Query:  332 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSXILVIRVPLLSEDWSEDDVNHSI-RMPSHVQVA--SVXRNNAKNAALYAVKVLGNADEDLLERIKKY 748
            V I+M S  D   M  AA       VP+ ++++  H+   +  S+A SA+E G ++II G G  AHL G+ AA + + V+ VP+ S   S  D  +SI +MP  + V   ++ +  A NAAL A ++L   D++L +R+  +
Sbjct:   10 VAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDW 151          
BLAST of EY720616 vs. ExPASy Swiss-Prot
Match: PUR6_METTH (Probable phosphoribosylaminoimidazole carboxylase OS=Methanobacterium thermoautotrophicum GN=purE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.138e-11
Identity = 45/151 (29.80%), Postives = 73/151 (48.34%), Query Frame = 2
Query:  311 DSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG--VAAANSXILVIRVPLLSEDWSEDDVNHSIRMPSHVQVASVXRNNAKNAALYAVKVLGNADEDLLERIKKYVGR 757
            DS D P+V +I  S  D+ +       L   G+ Y++ ++ P +  +    Y    K   +K+ I   G+ AH++G  VA ++  ++ +  PL    W  D +   I MP  V V +V   N  NAA+ A ++LG  DE +  RIK+   R
Sbjct:  184 DSQDDPMVSVIPGSYSDMKIAKKTTMFLERMGISYDLNVISPIRYPERFERYL--EKMENVKLFIAISGLSAHVTGAVVALSDRPVIGVPCPLKMNGW--DSLLSMINMPPGVPVGTVGVGNGGNAAILAAEMLGIYDEKIESRIKRIKSR 330          
BLAST of EY720616 vs. ExPASy Swiss-Prot
Match: PUR6_METJA (Phosphoribosylaminoimidazole carboxylase catalytic subunit OS=Methanocaldococcus jannaschii GN=purE PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11
Identity = 41/140 (29.29%), Postives = 78/140 (55.71%), Query Frame = 2
Query:  329 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSXILVIRVPLLSEDWSEDDVNHSIRMPSHVQVASVXRNNAKNAALYAVKVLGNADEDLLERIKKY 748
            ++ IIM S+ DL +   A   L +FGV +E+++   H+  +       ++K     + I   G+ AHL GV A+ +   VI VP+ ++    D +  S++MP  + VA+V  +  +NAA+ A+++L   DE++ +++ +Y
Sbjct:    1 MICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA---DVFIAIAGLAAHLPGVVASLTTKPVIAVPVDAKLDGLDALLSSVQMPPGIPVATVGIDRGENAAILALEILALKDENIAKKLIEY 137          
The following BLAST results are available for this feature:
BLAST of EY720616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
PUR6_ECO571.012e-1333.80Phosphoribosylaminoimidazole carboxylase catalytic... [more]
PUR6_METTH6.138e-1129.80Probable phosphoribosylaminoimidazole carboxylase ... [more]
PUR6_METJA8.016e-1129.29Phosphoribosylaminoimidazole carboxylase catalytic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-012-A05-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720616 ID=EY720616; Name=EY720616; organism=Citrus sinensis; type=EST; length=798bp
CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCAATGAAGACCATTA
CCATTGATCTGCGAGTGCTATTTTGTGTACTCAACAAGGTCATCGTTACT
TCTTGCTTAATAGAACCGCGGCAAAAAAAATTTGTTGAAGGAAAAGTTCG
GATGTTCAATAACAGCAAGCGTCCCAATTCGGTTCGTACTGTAAGCCGGG
GCACAATTCCTGTTTTAGCCTCGTCGAACGGCTCTGCTACTTCCAGAAGG
AAGGATGATTCATCTGTCCGTGAACCATCAACTGTCTTCGAGGAAGAAAA
CCCTAATGGTGACTCTACAGATGCCCCAATTGTTGGGATAATCATGGAAT
CGGATTTGGATCTTCCTGTTATGAATGATGCTGCGAGGACCTTGAGTGAC
TTCGGCGTACCTTATGAGATTAAAATATTACCACCTCATCAAAATTGCAA
GGAGGCATTGTCTTATGCATTGTCGGCTAAGGAGCGAGGCATTAAGATCA
TTATTGTTGGTGACGGTGTNGAAGCCCATTTATCAGGTGTAGCTGCTGCA
AATTCTCANATACTTGTTATTCGTGTTCCTTTATTAAGTGAAGACTGGAG
TGAAGATGATGTNAATCACTCAATTCGGATGCCAAGTCATGTCCAAGTTG
CATCTGTTNCCAGAAATAATGCGAAAAATGCTGCTCTATATGCAGTAAAG
GTACTTGGAAATGCTGACGAAGATTTATTGGAAAGAATCAAAAAGTACGT
GGGAAGAGTAATGGTGTTGGATAATTATCTGGGAGGTGGCAAATTAAT
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