FE659064

Overview
NameFE659064
Unique NameFE659064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length246
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FE659064 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.204e-14
Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 3 
Query:    3 GVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPV 134
            G ++G+ YW++KNSWG  WG++GYF +E GKNMCG+A CASYP+
Sbjct:  287 GEQNGLLYWIVKNSWGSQWGENGYFLIERGKNMCGLAACASYPI 330
[Close]
BLAST of FE659064 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 3 
Query:    3 GVEDGVPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 137
            G E G  YW++KNSWGE WGD GY  M    KN CGIAT ASYP+V
Sbjct:  173 GFEGGKKYWIVKNSWGEKWGDKGYIYMAKDRKNHCGIATAASYPLV 218
The following BLAST results are available for this feature:
BLAST of FE659064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CATH_MOUSE7.204e-1461.36Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
CATL1_CHICK7.455e-1163.04Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]

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Properties
Property NameValue
Genbank descriptionC2 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659064 ID=FE659064; Name=FE659064; organism=Citrus sinensis; type=EST; length=246bp
ACGGAGTTGAAGATGGTGTTCCATATTGGCTGATTAAGAACTCTTGGGGA
GAGAACTGGGGCGATCATGGCTACTTTAAGATGGAGATGGGGAAGAACAT
GTGTGGTATTGCAACTTGTGCATCATACCCAGTTGTGGCTTAGTCTGCTC
CTGAAGAAATAGTTGGATCTGGCTATCAGCAAGTCATTTGCTCATAAAAC
TTATATTATTTCACTCAAGCATGATAGCAGAATGGTTGGCTTTATG
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