EY720463

Overview
NameEY720463
Unique NameEY720463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MEXB_PSEAE (Multidrug resistance protein mexB OS=Pseudomonas aeruginosa GN=mexB PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 2.964e-19
Identity = 49/138 (35.51%), Postives = 84/138 (60.87%), Query Frame = 2
Query:   35 KLKQFNQQNSATFQGIPAPGVSLGQAVAFLQAHSQQLPASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANEL 448
            KL+++N   +    G PAPG+S G A+A ++   +QLP    + W   S +    G+     +  +L+V+++ LAA YES + P  +++ VPL + GAL+  ++   + +++ Q+GL+T IGL +K+ IL+VEFA EL
Sbjct:  814 KLERYNGVPAMEILGEPAPGLSSGDAMAAVEEIVKQLPKGVGYSWTGLSYEERLSGSQAPALYALSLLVVFLCLAALYESWSIPFSVMLVVPLGVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKEL 951          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: SRPB_PSEPU (Solvent-resistant pump membrane transporter srpB OS=Pseudomonas putida GN=srpB PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.871e-19
Identity = 50/138 (36.23%), Postives = 81/138 (58.70%), Query Frame = 2
Query:   35 KLKQFNQQNSATFQGIPAPGVSLGQAVAFLQAHSQQLPASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANEL 448
            KL+++   +S    G PAPG S G A+  +    QQLPA     +   S + I  G+   L +   ++++++ LAA YES + P+ +++ VPL I GA++       T ++Y Q+GL+T +GL +K+ IL+VEFA EL
Sbjct:  813 KLERYGGISSLNILGEPAPGYSTGDAMIAIAEIMQQLPAGIGLSYTGLSYEEIQTGDQAPLLYALTVLIVFLCLAALYESWSVPVSVIMVVPLGILGAVLATLWRDLTADVYFQVGLMTTVGLSAKNAILIVEFAKEL 950          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTF_ECOL6 (Multidrug resistance protein mdtF OS=Escherichia coli O6 GN=mdtF PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.871e-19
Identity = 54/151 (35.76%), Postives = 84/151 (55.63%), Query Frame = 2
Query:   35 KLKQFNQQNSATFQGIPAPGVSLGQAVAFLQAHSQQLPASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAII 487
            +L+++N   S    G  A G S G A+ F+     +LPA   + W   S Q     N     +  +L+V+++ LAA YES + P  +++ VPL + GAL+   L   + ++Y Q+GL+T IGL +K+ IL+VEFA E+      TP +AII
Sbjct:  813 RLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLPAGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGALLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKEGKTPVEAII 963          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTF_ECOLI (Multidrug resistance protein mdtF OS=Escherichia coli (strain K12) GN=mdtF PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.056e-19
Identity = 54/151 (35.76%), Postives = 84/151 (55.63%), Query Frame = 2
Query:   35 KLKQFNQQNSATFQGIPAPGVSLGQAVAFLQAHSQQLPASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAII 487
            +L+++N   S    G  A G S G A+ F+     +LPA   + W   S Q     N     +  +L+V+++ LAA YES + P  +++ VPL + GAL+   L   + ++Y Q+GL+T IGL +K+ IL+VEFA E+      TP +AII
Sbjct:  813 RLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLPAGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGALLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKEGKTPIEAII 963          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTF_ECO57 (Multidrug resistance protein mdtF OS=Escherichia coli O157:H7 GN=mdtF PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 5.056e-19
Identity = 54/151 (35.76%), Postives = 84/151 (55.63%), Query Frame = 2
Query:   35 KLKQFNQQNSATFQGIPAPGVSLGQAVAFLQAHSQQLPASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAII 487
            +L+++N   S    G  A G S G A+ F+     +LPA   + W   S Q     N     +  +L+V+++ LAA YES + P  +++ VPL + GAL+   L   + ++Y Q+GL+T IGL +K+ IL+VEFA E+      TP +AII
Sbjct:  813 RLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLPAGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGALLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKEGKTPIEAII 963          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: TTGH_PSEPU (Toluene efflux pump membrane transporter ttgH OS=Pseudomonas putida GN=ttgH PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.604e-19
Identity = 49/138 (35.51%), Postives = 81/138 (58.70%), Query Frame = 2
Query:   35 KLKQFNQQNSATFQGIPAPGVSLGQAVAFLQAHSQQLPASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANEL 448
            +L+++   +S    G PAPG S G ++  +    QQLPA     +   S + IH G+   L +   ++++ + LAA YES + P+ +++ VPL I GA++       T ++Y Q+GL+T +GL +K+ IL+VEFA EL
Sbjct:  813 RLERYGGISSLNILGEPAPGYSTGDSMIAIAEIMQQLPAGIGLSYTGLSYEEIHAGDQAPLLYALTVLIVVLCLAALYESWSVPVSVIMVVPLGILGAVLATLWRDLTADVYFQVGLMTTVGLSAKNAILIVEFAKEL 950          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: TTGE_PSEPU (Toluene efflux pump membrane transporter ttgE OS=Pseudomonas putida GN=ttgE PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.536e-18
Identity = 45/138 (32.61%), Postives = 80/138 (57.97%), Query Frame = 2
Query:   35 KLKQFNQQNSATFQGIPAPGVSLGQAVAFLQAHSQQLPASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANEL 448
            KL+++   ++    G PAPG S G A+  +    QQLP+     +   S + I  G+   + +   ++++++ LAA YES + P+ +++ VPL I GA++         ++Y Q+GL+T +GL +K+ IL++EFA EL
Sbjct:  815 KLERYGGISAVNILGEPAPGFSTGDAMIAIAQIMQQLPSGIGLSYNGLSYEEIRTGDQAPMLYALTVLIVFLCLAALYESWSVPMSVILVVPLGIFGAVLATLWRGLEADVYFQVGLMTTVGLSAKNAILIIEFAKEL 952          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: SEPB_PSEP1 (Probable efflux pump membrane transporter sepB OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=sepB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.536e-18
Identity = 45/138 (32.61%), Postives = 80/138 (57.97%), Query Frame = 2
Query:   35 KLKQFNQQNSATFQGIPAPGVSLGQAVAFLQAHSQQLPASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANEL 448
            KL+++   ++    G PAPG S G A+  +    QQLP+     +   S + I  G+   + +   ++++++ LAA YES + P+ +++ VPL I GA++         ++Y Q+GL+T +GL +K+ IL++EFA EL
Sbjct:  813 KLERYGGISAVNILGEPAPGFSTGDAMIAIAQIMQQLPSGIGLSYNGLSYEEIRTGDQAPMLYALTVLIVFLCLAALYESWSVPMSVILVVPLGIFGAVLATLWRGLEADVYFQVGLMTTVGLSAKNAILIIEFAKEL 950          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTB_YERPS (Multidrug resistance protein mdtB OS=Yersinia pseudotuberculosis GN=mdtB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.785e-15
Identity = 51/163 (31.29%), Postives = 84/163 (51.53%), Query Frame = 2
Query:    2 VVSLHSVIEPNKLKQFNQQNSATFQGIPAPGVSLGQAVAFLQAHSQ--QLPASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            + ++     P  +   NQ  SAT     A G SLG+AVA +    +  QLPA  +  +Q  +  F     + +   + A++ +Y+VL   YES   P+ IL T+P +  GAL+ L L    +++   IG++ LIG++ K+ I+M++FA   +     TP  AI
Sbjct:  795 IATIEERFGPLSINHLNQFPSATVSFNLAQGYSLGEAVAAVTLAEKEIQLPADITTRFQGSTLAFQAALGSTLWLIIAAIVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALMLTGNELDVIAIIGIILLIGIVKKNAIMMIDFALAAERDQGMTPYDAI 957          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTB_YERPE (Multidrug resistance protein mdtB OS=Yersinia pestis GN=mdtB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.785e-15
Identity = 51/163 (31.29%), Postives = 84/163 (51.53%), Query Frame = 2
Query:    2 VVSLHSVIEPNKLKQFNQQNSATFQGIPAPGVSLGQAVAFLQAHSQ--QLPASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            + ++     P  +   NQ  SAT     A G SLG+AVA +    +  QLPA  +  +Q  +  F     + +   + A++ +Y+VL   YES   P+ IL T+P +  GAL+ L L    +++   IG++ LIG++ K+ I+M++FA   +     TP  AI
Sbjct:  795 IATIEERFGPLSINHLNQFPSATVSFNLAQGYSLGEAVAAVTLAEKEIQLPADITTRFQGSTLAFQAALGSTLWLIIAAIVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALMLTGNELDVIAIIGIILLIGIVKKNAIMMIDFALAAERDQGMTPYDAI 957          
The following BLAST results are available for this feature:
BLAST of EY720463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
MEXB_PSEAE2.964e-1935.51Multidrug resistance protein mexB OS=Pseudomonas a... [more]
SRPB_PSEPU3.871e-1936.23Solvent-resistant pump membrane transporter srpB O... [more]
MDTF_ECOL63.871e-1935.76Multidrug resistance protein mdtF OS=Escherichia c... [more]
MDTF_ECOLI5.056e-1935.76Multidrug resistance protein mdtF OS=Escherichia c... [more]
MDTF_ECO575.056e-1935.76Multidrug resistance protein mdtF OS=Escherichia c... [more]
TTGH_PSEPU6.604e-1935.51Toluene efflux pump membrane transporter ttgH OS=P... [more]
TTGE_PSEPU9.536e-1832.61Toluene efflux pump membrane transporter ttgE OS=P... [more]
SEPB_PSEP19.536e-1832.61Probable efflux pump membrane transporter sepB OS=... [more]
MDTB_YERPS5.785e-1531.29Multidrug resistance protein mdtB OS=Yersinia pseu... [more]
MDTB_YERPE5.785e-1531.29Multidrug resistance protein mdtB OS=Yersinia pest... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-009-G09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720463 ID=EY720463; Name=EY720463; organism=Citrus sinensis; type=EST; length=489bp
CGTGGTGAGCCTGCACAGCGTGATCGAGCCGAACAAGCTCAAGCAGTTCA
ATCAGCAGAACAGCGCGACCTTCCAGGGCATCCCGGCGCCGGGGGTCAGC
CTGGGTCAGGCGGTGGCGTTTTTGCAGGCGCACAGCCAACAGCTGCCGGC
CAGCTTCAGCCATGACTGGCAGGCCGATTCGCGCCAGTTCATTCACGAAG
GCAATGCGTTGATGCTGACGTTCCTGTTTGCGCTGATCGTGATCTATATG
GTGCTGGCCGCGCAGTATGAAAGCCTGACCGATCCGCTGATCATCCTGAT
CACGGTGCCGCTGTCGATCTGCGGCGCGTTGATCCCGCTGGCCCTGGGTT
TGGCCACGATCAACATCTACACGCAGATTGGCTTGGTGACGTTGATCGGA
CTGATCAGCAAACACGGGATCCTGATGGTCGAGTTCGCCAACGAGTTACA
GCTGCTATACCGCTGCACACCGGCTCAGGCGATCATTCG
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