EY720463

Overview
NameEY720463
Unique NameEY720463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_SALG2 (Multidrug resistance protein mdtC OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=mdtC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.871e-14
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 2
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL QA   +     QL  P++    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TPAQAI
Sbjct:  811 GTSLSQATEAINRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILIVAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRSGGLTPAQAI 943          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_SALEP (Multidrug resistance protein mdtC OS=Salmonella enteritidis PT4 (strain P125109) GN=mdtC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.871e-14
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 2
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL QA   +     QL  P++    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TPAQAI
Sbjct:  811 GTSLSQATEAINRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILIVAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRSGGLTPAQAI 943          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: NOLG_RHIME (Nodulation protein nolG OS=Rhizobium meliloti GN=nolG PE=4 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 39/119 (32.77%), Postives = 72/119 (60.50%), Query Frame = 2
Query:   92 GVSLGQAVAFLQAH--SQQLPASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFAN 442
            G +LG  VA L+A      +P  F   +  D+          + +   A+I IY++LA+Q+ S   P+ I++T+PLS+ G L+ L    +T+N+++ IG++ L+GL++K+ IL+V+++N
Sbjct:  822 GRTLGDVVADLKAAMTKMDIPVGFRISFGGDAENLTESTAYALQSLAMAVIFIYIILASQFGSFIQPIAIIMTMPLSLMGVLLGLLFTGSTLNMFSMIGIMMLMGLVTKNAILLVDYSN 940          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_SALPC (Multidrug resistance protein mdtC OS=Salmonella paratyphi C (strain RKS4594) GN=mdtC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.897e-14
Identity = 48/133 (36.09%), Postives = 72/133 (54.14%), Query Frame = 2
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL QA   +     QL  P +    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TPAQAI
Sbjct:  811 GTSLSQATEAINRTMTQLGVPPTVRGSFSGTAQVFQQTMNSQLILIVAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRSGGLTPAQAI 943          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_SALCH (Multidrug resistance protein mdtC OS=Salmonella choleraesuis GN=mdtC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.897e-14
Identity = 48/133 (36.09%), Postives = 72/133 (54.14%), Query Frame = 2
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL QA   +     QL  P +    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TPAQAI
Sbjct:  811 GTSLSQATEAINRTMTQLGVPPTVRGSFSGTAQVFQQTMNSQLILIVAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRSGGLTPAQAI 943          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_SALPA (Multidrug resistance protein mdtC OS=Salmonella paratyphi A GN=mdtC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.354e-14
Identity = 47/133 (35.34%), Postives = 72/133 (54.14%), Query Frame = 2
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL QA   +     QL  P++    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TP QAI
Sbjct:  811 GTSLSQATEAINRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILIVAAIATVYIVLEILYESYVHPLTILSTLPSASVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRSGGLTPEQAI 943          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_SALTY (Multidrug resistance protein mdtC OS=Salmonella typhimurium GN=mdtC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.091e-13
Identity = 47/133 (35.34%), Postives = 72/133 (54.14%), Query Frame = 2
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL QA   +     QL  P++    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TP QAI
Sbjct:  811 GTSLSQATEAINRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILIVAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRSGGLTPEQAI 943          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_SALTI (Multidrug resistance protein mdtC OS=Salmonella typhi GN=mdtC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.091e-13
Identity = 47/133 (35.34%), Postives = 72/133 (54.14%), Query Frame = 2
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL QA   +     QL  P++    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TP QAI
Sbjct:  811 GTSLSQATEAIDRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILIVAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRSGGLTPEQAI 943          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_SALNS (Multidrug resistance protein mdtC OS=Salmonella newport (strain SL254) GN=mdtC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.091e-13
Identity = 47/133 (35.34%), Postives = 72/133 (54.14%), Query Frame = 2
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL QA   +     QL  P++    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TP QAI
Sbjct:  811 GTSLSQATEAINRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILIVAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRSGGLTPEQAI 943          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_SALDC (Multidrug resistance protein mdtC OS=Salmonella dublin (strain CT_02021853) GN=mdtC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.091e-13
Identity = 47/133 (35.34%), Postives = 72/133 (54.14%), Query Frame = 2
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL QA   +     QL  P++    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TP QAI
Sbjct:  811 GTSLSQATEAINRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILIVAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRSGGLTPEQAI 943          
The following BLAST results are available for this feature:
BLAST of EY720463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
MDTC_SALG22.871e-1436.09Multidrug resistance protein mdtC OS=Salmonella ga... [more]
MDTC_SALEP2.871e-1436.09Multidrug resistance protein mdtC OS=Salmonella en... [more]
NOLG_RHIME3.750e-1432.77Nodulation protein nolG OS=Rhizobium meliloti GN=n... [more]
MDTC_SALPC4.897e-1436.09Multidrug resistance protein mdtC OS=Salmonella pa... [more]
MDTC_SALCH4.897e-1436.09Multidrug resistance protein mdtC OS=Salmonella ch... [more]
MDTC_SALPA8.354e-1435.34Multidrug resistance protein mdtC OS=Salmonella pa... [more]
MDTC_SALTY1.091e-1335.34Multidrug resistance protein mdtC OS=Salmonella ty... [more]
MDTC_SALTI1.091e-1335.34Multidrug resistance protein mdtC OS=Salmonella ty... [more]
MDTC_SALNS1.091e-1335.34Multidrug resistance protein mdtC OS=Salmonella ne... [more]
MDTC_SALDC1.091e-1335.34Multidrug resistance protein mdtC OS=Salmonella du... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-009-G09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720463 ID=EY720463; Name=EY720463; organism=Citrus sinensis; type=EST; length=489bp
CGTGGTGAGCCTGCACAGCGTGATCGAGCCGAACAAGCTCAAGCAGTTCA
ATCAGCAGAACAGCGCGACCTTCCAGGGCATCCCGGCGCCGGGGGTCAGC
CTGGGTCAGGCGGTGGCGTTTTTGCAGGCGCACAGCCAACAGCTGCCGGC
CAGCTTCAGCCATGACTGGCAGGCCGATTCGCGCCAGTTCATTCACGAAG
GCAATGCGTTGATGCTGACGTTCCTGTTTGCGCTGATCGTGATCTATATG
GTGCTGGCCGCGCAGTATGAAAGCCTGACCGATCCGCTGATCATCCTGAT
CACGGTGCCGCTGTCGATCTGCGGCGCGTTGATCCCGCTGGCCCTGGGTT
TGGCCACGATCAACATCTACACGCAGATTGGCTTGGTGACGTTGATCGGA
CTGATCAGCAAACACGGGATCCTGATGGTCGAGTTCGCCAACGAGTTACA
GCTGCTATACCGCTGCACACCGGCTCAGGCGATCATTCG
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