EY720463

Overview
NameEY720463
Unique NameEY720463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_SALPK (Multidrug resistance protein mdtC OS=Salmonella paratyphi A (strain AKU_12601) GN=mdtC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.425e-13
Identity = 47/133 (35.34%), Postives = 72/133 (54.14%), Query Frame = 2
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL QA   +     QL  P++    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TP QAI
Sbjct:  811 GTSLSQATEAINRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILIVAAIATVYIVLEILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRSGGLTPEQAI 943          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_CITK8 (Multidrug resistance protein mdtC OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=mdtC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.425e-13
Identity = 47/133 (35.34%), Postives = 72/133 (54.14%), Query Frame = 2
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL +A   +     QL  P++    +   ++ F    N+ ++  L A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TP QAI
Sbjct:  811 GTSLSEATEAINRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILILAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRNGNLTPEQAI 943          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_SALSV (Multidrug resistance protein mdtC OS=Salmonella schwarzengrund (strain CVM19633) GN=mdtC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.861e-13
Identity = 47/133 (35.34%), Postives = 71/133 (53.38%), Query Frame = 2
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL QA   +     QL  P +    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TP QAI
Sbjct:  811 GTSLSQATEAINRTMTQLGVPPTVRGSFSGTAQVFQQTMNSQLILIVAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRSGGLTPEQAI 943          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_SALPB (Multidrug resistance protein mdtC OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=mdtC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.861e-13
Identity = 47/133 (35.34%), Postives = 71/133 (53.38%), Query Frame = 2
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL QA   +     QL  P +    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TP QAI
Sbjct:  811 GTSLSQATEAINRTMTQLGVPPTVRGSFSGTAQVFQQTMNSQLILIVAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRSGGLTPEQAI 943          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_SALHS (Multidrug resistance protein mdtC OS=Salmonella heidelberg (strain SL476) GN=mdtC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.861e-13
Identity = 47/133 (35.34%), Postives = 71/133 (53.38%), Query Frame = 2
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL QA   +     QL  P +    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TP QAI
Sbjct:  811 GTSLSQATEAINRTMTQLGVPPTVRGSFSGTAQVFQQTMNSQLILIVAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRSGGLTPEQAI 943          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_SALAR (Multidrug resistance protein mdtC OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=mdtC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.861e-13
Identity = 47/133 (35.34%), Postives = 71/133 (53.38%), Query Frame = 2
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL QA   +     QL  P +    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TP QAI
Sbjct:  811 GTSLSQATEAINRTMTQLGVPPTVRGSFAGTAQVFQQTMNSQLILIMAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRSGGLTPEQAI 943          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_SALA4 (Multidrug resistance protein mdtC OS=Salmonella agona (strain SL483) GN=mdtC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.861e-13
Identity = 47/133 (35.34%), Postives = 71/133 (53.38%), Query Frame = 2
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL QA   +     QL  P +    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TP QAI
Sbjct:  811 GTSLSQATEAINRTMTQLGVPPTVRGSFSGTAQVFQQTMNSQLILIVAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRSGGLTPEQAI 943          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTB_ENTS8 (Multidrug resistance protein mdtB OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=mdtB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.431e-13
Identity = 48/154 (31.17%), Postives = 79/154 (51.30%), Query Frame = 2
Query:   29 PNKLKQFNQQNSATFQGIPAPGVSLGQAV-AFLQAHSQ-QLPASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            P  +   +Q  S T       G SLG AV A  QA +    PA  +  +Q  +  F     + +   L +++ +Y+VL   YES   P+ IL T+P +  GAL+ L +  A +++   IG++ LIG++ K+ I+M++FA   +     TP +AI
Sbjct:  804 PLTINHLDQFPSTTISFNVPDGYSLGDAVDAITQAEADLAFPAEITTQFQGSTLAFQAALGSTLWLILASVVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALLIAGAELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMTPREAI 957          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: YCBL_BACUN (Uncharacterized 17.3 kDa protein in cblS 5'region OS=Bacteroides uniformis PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.174e-13
Identity = 34/84 (40.48%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  200 GNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQ 451
            G    + F+ AL+V ++VLAAQYES T P+  ++ +P+++ GA++   +    ++IYTQIG++ L+ L +K+GIL+VEFA + +
Sbjct:   12 GTTTTVVFVMALLVAFLVLAAQYESWTSPVAAVMGLPVALLGAMLGCYVMGTPVSIYTQIGIILLVALSAKNGILIVEFARDFR 95          
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTB_ERWCT (Multidrug resistance protein mdtB OS=Erwinia carotovora subsp. atroseptica GN=mdtB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.174e-13
Identity = 45/139 (32.37%), Postives = 76/139 (54.68%), Query Frame = 2
Query:   29 PNKLKQFNQQNSATFQGIPAPGVSLGQAV-AFLQAHSQQ-LPASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFA 439
            P  +   +Q  S T     A G +LG+AV A  QA  Q  LPA  +  +Q  +  F    ++ +   + A++ +Y+VL   YES   P+ IL T+P +  GAL+ L +    +++   IG++ LIG++ K+ I+M++FA
Sbjct:  804 PLAINHIDQFPSTTISFNVASGYALGEAVDAITQAEQQMNLPADITTRFQGSTLAFQSALSSTVWLIVAAIVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALMMAGKDLDVIAIIGIILLIGIVKKNAIMMIDFA 942          
The following BLAST results are available for this feature:
BLAST of EY720463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
MDTC_SALPK1.425e-1335.34Multidrug resistance protein mdtC OS=Salmonella pa... [more]
MDTC_CITK81.425e-1335.34Multidrug resistance protein mdtC OS=Citrobacter k... [more]
MDTC_SALSV1.861e-1335.34Multidrug resistance protein mdtC OS=Salmonella sc... [more]
MDTC_SALPB1.861e-1335.34Multidrug resistance protein mdtC OS=Salmonella pa... [more]
MDTC_SALHS1.861e-1335.34Multidrug resistance protein mdtC OS=Salmonella he... [more]
MDTC_SALAR1.861e-1335.34Multidrug resistance protein mdtC OS=Salmonella ar... [more]
MDTC_SALA41.861e-1335.34Multidrug resistance protein mdtC OS=Salmonella ag... [more]
MDTB_ENTS82.431e-1331.17Multidrug resistance protein mdtB OS=Enterobacter ... [more]
YCBL_BACUN3.174e-1340.48Uncharacterized 17.3 kDa protein in cblS 5'region ... [more]
MDTB_ERWCT3.174e-1332.37Multidrug resistance protein mdtB OS=Erwinia carot... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-009-G09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720463 ID=EY720463; Name=EY720463; organism=Citrus sinensis; type=EST; length=489bp
CGTGGTGAGCCTGCACAGCGTGATCGAGCCGAACAAGCTCAAGCAGTTCA
ATCAGCAGAACAGCGCGACCTTCCAGGGCATCCCGGCGCCGGGGGTCAGC
CTGGGTCAGGCGGTGGCGTTTTTGCAGGCGCACAGCCAACAGCTGCCGGC
CAGCTTCAGCCATGACTGGCAGGCCGATTCGCGCCAGTTCATTCACGAAG
GCAATGCGTTGATGCTGACGTTCCTGTTTGCGCTGATCGTGATCTATATG
GTGCTGGCCGCGCAGTATGAAAGCCTGACCGATCCGCTGATCATCCTGAT
CACGGTGCCGCTGTCGATCTGCGGCGCGTTGATCCCGCTGGCCCTGGGTT
TGGCCACGATCAACATCTACACGCAGATTGGCTTGGTGACGTTGATCGGA
CTGATCAGCAAACACGGGATCCTGATGGTCGAGTTCGCCAACGAGTTACA
GCTGCTATACCGCTGCACACCGGCTCAGGCGATCATTCG
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